BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0714100 Os01g0714100|AK060399
         (395 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20610.1  | chr5:6969184-6972794 FORWARD LENGTH=1165           313   1e-85
AT5G26160.1  | chr5:9143269-9146312 FORWARD LENGTH=977            132   3e-31

>AT5G20610.1 | chr5:6969184-6972794 FORWARD LENGTH=1165
          Length = 1164

 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 200/404 (49%), Positives = 258/404 (63%), Gaps = 42/404 (10%)

Query: 2    MQQIAWEASPALESSERYDLLDNHTMDA---LAGGIGNATFGKSKKGRCTDLSSSLGRES 58
            M+++ WE SP ++  +R  + +  + DA   + GG    +F    K      SSS     
Sbjct: 788  MEEVLWETSPTIDIGDRDHVSERESGDASGFVRGGERRTSFAAKPKKFG---SSSGNNNF 844

Query: 59   TSEYVSLEDLAPLAMEKIEALSIEGLRIQSGMSEEDAPSNISAQPIGEFSSLQGKCAGNT 118
             SEYVSLEDLAPLAM++IEALS+EGLRIQSGMS+EDAPS+I+AQ IG+ S+ QGK     
Sbjct: 845  DSEYVSLEDLAPLAMDQIEALSLEGLRIQSGMSDEDAPSDITAQSIGDISAFQGKSG--- 901

Query: 119  LSLGLEGTAGLQLLDVKQSGGDVDGLMGL-SITLDEWMRLDSGIVDEDEQFTDRTSKILA 177
              +GLEG AGLQLLD+K  G D D  +   S+TLDEWM+LDSG + ++++  +RTSKILA
Sbjct: 902  -CVGLEGAAGLQLLDIKDDGDDDDDGLMGLSLTLDEWMKLDSGDIGDEDEINERTSKILA 960

Query: 178  AHHAKSMELVAENQNVDKKNRRSGRRWGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALI 237
            AHHA  +  + +    +K+  + GR+ GLLGN FTVALMVQLRDPLRNYEPVG PML+LI
Sbjct: 961  AHHANPLNFIRKGSKGEKRKGKKGRKCGLLGNTFTVALMVQLRDPLRNYEPVGAPMLSLI 1020

Query: 238  QVERVFVPPKPKIYSTVTDKGNSEHDDEEPKTXXXXXXXXXXXXXXXXXXDSVPQFKVAE 297
            QVER+FVPPKPKIYSTV++   ++ ++E                        +PQ+K+ E
Sbjct: 1021 QVERLFVPPKPKIYSTVSELKKTDEEEE-------ADASDAKKEEKPMEEQGIPQYKITE 1073

Query: 298  VHVAGFKSEPEKTKSWGNQTQQ---QSGSRWLLAAGMGKG-NKHPLMKSK-AIAKPTKEA 352
            VH+ G KSE +K K WG  TQQ   QSGSRWL+A GMGKG NK PLMK K   AKP    
Sbjct: 1074 VHLTGMKSETDK-KPWGITTQQQQVQSGSRWLMANGMGKGNNKLPLMKPKLGSAKPG--- 1129

Query: 353  AGQSEDTLWSISSRVHGAGTRWGELA------GPKRNPNILLQK 390
                 D LWS+S    G+G++W EL          RNPN+++ K
Sbjct: 1130 -----DKLWSVS----GSGSKWKELGKMGKSNTHIRNPNVIMPK 1164



>AT5G26160.1 | chr5:9143269-9146312 FORWARD LENGTH=977
          Length = 976

 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 144/332 (43%), Gaps = 87/332 (26%)

Query: 63  VSLEDLAPLAMEKIEALSIEGLRIQSGMSEEDAPSNISAQPIGEFSSLQGKCAGNTLSLG 122
           V LED+  LA+++I  LSIEGL+IQ  MS++D PS I+ +P+ +  +L+           
Sbjct: 724 VPLEDVTSLAIDEIYILSIEGLKIQCSMSDQDPPSGIAPKPMDQSDALE----------- 772

Query: 123 LEGTAGLQLLDVKQSGGDVDGLMGLSITLDEWMRLDSGIVDEDEQFTDRTSKILAAHHAK 182
                                L+  S+TLDEW+RLD G++                    
Sbjct: 773 ---------------------LIRFSLTLDEWLRLDQGML-------------------- 791

Query: 183 SMELVAENQNVDKKNRRSGRRWGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERV 242
                 EN++ D  +   G     L N  T+AL V LRDP  N EP+G  MLALIQVER 
Sbjct: 792 ------ENKDQDLASNGKGHT---LRNKLTLALQVLLRDPSLNNEPIGASMLALIQVERS 842

Query: 243 FVPPKPKIYSTVTDKGNSEHDDEEPKTXXXXXXXXXXXXXXXXXXDSVPQFKVAEVHVAG 302
              P   + S   +  N E    + +                        +++ E+ +AG
Sbjct: 843 LDSPNSSLCSLAQEGRNKESFGYDTQL-----------------------WRITEIGLAG 879

Query: 303 FKSEPEKTKSWGNQTQQQSGSRWLLAAGMGKGNKHPLMKSKAIAKPTKEAAGQSEDTLWS 362
            K EP     W  ++QQQSGSRWLLA G  K  K    +SK I     +A  +  DTLWS
Sbjct: 880 LKIEPGADHPWCTKSQQQSGSRWLLANGTDKTIKCQASESKVIIVSNVQATRKRLDTLWS 939

Query: 363 -ISSRVHGAGTRWGELAGP--KRNPNILLQKE 391
            IS R H  G      A     RN +++   E
Sbjct: 940 IISDRHHQEGDLSNSAASVPFTRNLDVIFSNE 971



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,471,639
Number of extensions: 344335
Number of successful extensions: 685
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)