BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0713700 Os01g0713700|Os01g0713700
         (461 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08420.1  | chr5:2713555-2716064 FORWARD LENGTH=392            383   e-106

>AT5G08420.1 | chr5:2713555-2716064 FORWARD LENGTH=392
          Length = 391

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/339 (60%), Positives = 246/339 (72%), Gaps = 28/339 (8%)

Query: 36  NIDHWKIEEFDPSWNEGGMLEVTSFSTLFPQYRGKSPHPTPPSALSWFLPRSAIDWFCLV 95
           NID W IE+FDP+WN  GM E ++FSTLFPQYR                           
Sbjct: 35  NIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYR--------------------------- 67

Query: 96  VKKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSV 155
            +KYLQE WP V+ ALKE+GVAC+LNLVEGSMTVSTTRKT+DPYII+KA +LIKLLSRSV
Sbjct: 68  -EKYLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSV 126

Query: 156 PAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQG 215
           PAPQAIKIL DE+ C IIKIG+++RNKERFVKRR RL+GPN STLKA+EILT CYILVQG
Sbjct: 127 PAPQAIKILEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQG 186

Query: 216 NTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKRELVKNPALAHESWDXXXXXX 275
           +T AAMG +KGLKQ+ R+VEDC++N+ HPVYHIK L++K+EL K+PALA+ESWD      
Sbjct: 187 STVAAMGPFKGLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTF 246

Query: 276 XXXXXXXXXXXXXXXXQYTPFPPPQQPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQ 335
                            YTPFPPPQ PSKID++LESGE FMSDKKKS K+WQEK EKQS+
Sbjct: 247 RKKNVKQKKPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSE 306

Query: 336 KAEENKRKREAAFVHPNEDIATPYESAKSIINNGEIADM 374
           K+ ENKRKR+A+F+ P E +     + KS     +I ++
Sbjct: 307 KSTENKRKRDASFLPPEEPMNNNSNANKSEDGKNDITEL 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,274,506
Number of extensions: 362782
Number of successful extensions: 1628
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,310,137
Effective search space: 2983339183
Effective search space used: 2983339183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)