BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0711100 Os01g0711100|AK068087
(323 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02090.2 | chr3:365624-368534 FORWARD LENGTH=536 352 1e-97
AT1G51980.1 | chr1:19323692-19326771 REVERSE LENGTH=504 97 1e-20
AT3G16480.1 | chr3:5599906-5602716 FORWARD LENGTH=500 95 5e-20
>AT3G02090.2 | chr3:365624-368534 FORWARD LENGTH=536
Length = 535
Score = 352 bits (903), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 161/282 (57%), Positives = 216/282 (76%)
Query: 1 MEEVQGMMDEVIFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVV 60
M+EV+G DEV+ DHLHA AFQ PLG TILGP +N+KSI+++DL+ YI THYT RMV+
Sbjct: 222 MQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVI 281
Query: 61 SAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIA 120
+AAGAV H+EVV+QV++ FT S+DPTT QLV PA FTGSEVR+ ++PL FA+A
Sbjct: 282 AAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSEVRMIDDDLPLAQFAVA 341
Query: 121 FKGSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESMIAFNTNYRD 180
F+G+SW +P S+ LMV+Q++LG+WN+++G G GS L + ++ +AES++AFNTNY+D
Sbjct: 342 FEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKD 401
Query: 181 TGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGSTAVS 240
TGLFG+ +A+ D L DLS IM E +LA+ VS+ +V RARNQLKS+LLLH+DG++ ++
Sbjct: 402 TGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHMDGTSPIA 461
Query: 241 ENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDK 282
E+ GRQ+LTYGR +P ELFARIDAVD TV A +I DK
Sbjct: 462 EDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDK 503
>AT1G51980.1 | chr1:19323692-19326771 REVERSE LENGTH=504
Length = 503
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 149/291 (51%), Gaps = 16/291 (5%)
Query: 12 IFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVVSAAGAVNHDEV 71
+ + +H+A + G PL + P + ++ + LE+++T ++T RMV++A+G V H+E+
Sbjct: 213 LLEAIHSAGYSG-PLASPLYAPESALDRLNGELLEEFMTENFTAARMVLAASG-VEHEEL 270
Query: 72 VDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIAFKGSSWAN-PS 130
+ +V E T S P QL A + + G + R + THFA+AF+ W N
Sbjct: 271 L-KVAEPLT--SDLPNVPPQL--APKSQYVGGDFR-QHTGGEATHFAVAFEVPGWNNEKE 324
Query: 131 SIPLMVIQSILGTWNRSIGVGNCSG--SALARGISNG-NLAESMIAFNTNYRDTGLFGIC 187
++ V+Q ++G G G S L R + N +S AF + + DTGLFGI
Sbjct: 325 AVTATVLQMLMGGGGSFSAGGPGKGMHSWLYRRVLNEYQEVQSCTAFTSIFNDTGLFGIY 384
Query: 188 TIAQPDSLYDLSQLIMQEFRRLAF-EVSETEVARARNQLKSALLLHIDGSTAVSENNGRQ 246
+ P +L +E + +A +V++ + RA+ KSA+L++++ +E+ GRQ
Sbjct: 385 GCSSPQFAAKAIELAAKELKDVAGGKVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQ 444
Query: 247 MLTYGRVMPFLELFARIDAVD-RDTVMETAKDFIIDKDIALAAVGPLTNLP 296
+LTYG P + +D + +D T+K +I K + + + G + +P
Sbjct: 445 ILTYGERKPVDQFLKSVDQLTLKDIADFTSK--VISKPLTMGSFGDVLAVP 493
>AT3G16480.1 | chr3:5599906-5602716 FORWARD LENGTH=500
Length = 499
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 22/294 (7%)
Query: 12 IFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVVSAAGAVNHDEV 71
+ + +H+A + G L + + P I ++ + LE ++ +YT RMV++A+G V+H+E+
Sbjct: 209 LLEAVHSAGYSG-ALANPLYAPESAITGLTGEVLENFVFENYTASRMVLAASG-VDHEEL 266
Query: 72 VDQVREFFTGFSTDPTTVD---QLVEANPAIFTGSEVRVEQPEMPLTHFAIAFKGSSWAN 128
+ V + P + Q V + TG E THFA+AF+ W N
Sbjct: 267 LKVVEPLLSDLPNVPRPAEPKSQYVGGDFRQHTGGEA---------THFALAFEVPGWNN 317
Query: 129 -PSSIPLMVIQSILGTWNRSIGVGNCSGS---ALARGISNGNLAESMIAFNTNYRDTGLF 184
+I V+Q ++G G G R ++ +S AF + + +TGLF
Sbjct: 318 EKEAIIATVLQMLMGGGGSFSAGGPGKGMHSWLYLRLLNQHQQFQSCTAFTSVFNNTGLF 377
Query: 185 GICTIAQPDSLYDLSQLIMQEFRRLA-FEVSETEVARARNQLKSALLLHIDGSTAVSENN 243
GI P+ +L+ E +A +V++ + RA+ KSA+L++++ +E+
Sbjct: 378 GIYGCTSPEFASQGIELVASEMNAVADGKVNQKHLDRAKAATKSAILMNLESRMIAAEDI 437
Query: 244 GRQMLTYGRVMPFLELFARIDAVD-RDTVMETAKDFIIDKDIALAAVGPLTNLP 296
GRQ+LTYG P + +D + +D T+K +I K + +A G + N+P
Sbjct: 438 GRQILTYGERKPVDQFLKTVDQLTLKDIADFTSK--VITKPLTMATFGDVLNVP 489
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,749,079
Number of extensions: 263038
Number of successful extensions: 619
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,392,385
Effective search space: 1879894240
Effective search space used: 1879894240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)