BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0704700 Os01g0704700|AK100296
(312 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35440.2 | chr4:16836367-16839345 REVERSE LENGTH=750 188 3e-48
AT1G55620.2 | chr1:20787338-20790990 REVERSE LENGTH=782 122 3e-28
>AT4G35440.2 | chr4:16836367-16839345 REVERSE LENGTH=750
Length = 749
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 123/228 (53%), Gaps = 5/228 (2%)
Query: 82 PGRDLVTLAACXXXXXXXXXXXXXXXXXHEIRDLFWDGIPLRGASWLREESIGEIWQRVI 141
P ++L +AC H +RD WDGIP RGASWLRE IG W RVI
Sbjct: 71 PSQELAIASACLVGVLTGVSVVLFNNCVHLLRDFSWDGIPDRGASWLREAPIGSNWLRVI 130
Query: 142 LVPVSGGIIVGVFNTLRSSIATNSNDTMS---KIKGAFRPFLKAMAASFTLGTGNSLGPE 198
LVP GG++V + N LR S ++ D+ S ++K RPFLK +AA TLGTGNSLGPE
Sbjct: 131 LVPTIGGLVVSILNQLRESAGKSTGDSHSSLDRVKAVLRPFLKTVAACVTLGTGNSLGPE 190
Query: 199 GPSVEIGSSIAKGFGNVFKLEGGKKLSLXXXXXXXXXXXXXXXXXXGCFFAVESVLWPTX 258
GPSVEIG+SIAKG ++F SL GCFFAVESVLWP+
Sbjct: 191 GPSVEIGASIAKGVNSLFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFFAVESVLWPSS 250
Query: 259 XXXXXXX--XXTPMXXXXXXXXXXXXEIGLGSDPAFTVPEYDFRSPTE 304
T M EIGLGS+PAF VP+YDFRSP E
Sbjct: 251 STDSSTSLPNTTSMVILSAVTASVVSEIGLGSEPAFKVPDYDFRSPGE 298
>AT1G55620.2 | chr1:20787338-20790990 REVERSE LENGTH=782
Length = 781
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 6/201 (2%)
Query: 110 HEIRDLFWDGIPLRGASWLREESIGEIWQRVILVPVSGGIIVGVFNTLRSSIATNSNDTM 169
H I + W G P GA+WLR + + + W R++L+PV+GG+IVG+ + L +
Sbjct: 154 HVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILDQIRQSNS 213
Query: 170 SKIKG-----AFRPFLKAMAASFTLGTGNSLGPEGPSVEIGSSIAKGFGNVFKLEGGKKL 224
S+ +G P +KA+ A+ TLGTG SLGPEGPSV+IG S A GF + + +++
Sbjct: 214 SQRQGLDFLAGIYPVIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFALMMENNRERRI 273
Query: 225 SLXXXXXXXXXXXXXXXXXXGCFFAVESVLWPTXXXXXXXXXXTPMXXXXXXXXXXXXEI 284
+L GCFFA+E+VL P T M
Sbjct: 274 ALTAAGAASGIASGFNAAVAGCFFAIETVLRP-LRAENSPPFTTAMIILASVISSTVSNA 332
Query: 285 GLGSDPAFTVPEYDFRSPTEI 305
LG+ AFTVP YD +S E+
Sbjct: 333 LLGTQSAFTVPSYDLKSAAEL 353
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,166,896
Number of extensions: 123909
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)