BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0689000 Os01g0689000|AK111204
         (245 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25370.1  | chr1:8898046-8898934 REVERSE LENGTH=264             59   2e-09
AT3G60410.1  | chr3:22331612-22332680 FORWARD LENGTH=325           56   2e-08
AT3G18295.1  | chr3:6281268-6282000 FORWARD LENGTH=217             52   2e-07

>AT1G25370.1 | chr1:8898046-8898934 REVERSE LENGTH=264
          Length = 263

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 183 ERPPFAVALAAEEIEEDMYALTGGXXXXXXXXXXXXXXXXLDSLFPGLWLTEITADAYKV 242
           +RP F++ L+ +E+EED   + G                 LDSLFPGL+LTE+T DAYKV
Sbjct: 202 KRPMFSMKLSKKEMEEDFIGMVGHRAPRRPKKRSKTVQKKLDSLFPGLYLTEVTHDAYKV 261

Query: 243 PD 244
           P+
Sbjct: 262 PE 263



>AT3G60410.1 | chr3:22331612-22332680 FORWARD LENGTH=325
          Length = 324

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 183 ERPPFAVALAAEEIEEDMYALTGGXXXXXXXXXXXXXXXXLDSLFPGLWLTEITADAYKV 242
           ++P  +++L+  EI+ED+YALTG                 LD LFPGLW+  ++++AYKV
Sbjct: 261 KKPRLSISLSKLEIDEDIYALTGSKPSRRPKKRAKNVQKQLDVLFPGLWMGNVSSEAYKV 320

Query: 243 PD 244
            +
Sbjct: 321 SE 322



>AT3G18295.1 | chr3:6281268-6282000 FORWARD LENGTH=217
          Length = 216

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 183 ERPPFAVALAAEEIEEDMYALTGGXXXXXXXXXXXXXXXXLDSLFPGLWLT-EITADAYK 241
           E+  F+V+L  EEIE+D  AL G                 +++LFPGLWL  E+TAD+Y 
Sbjct: 150 EKVKFSVSLLREEIEQDFSALIGKRPPRRPKKRPRLVQKQMNTLFPGLWLAEEVTADSYD 209

Query: 242 VPD 244
           VP+
Sbjct: 210 VPE 212



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,923,661
Number of extensions: 64543
Number of successful extensions: 265
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 3
Length of query: 245
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,474,633
Effective search space: 1262720317
Effective search space used: 1262720317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)