BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0688800 Os01g0688800|Os01g0688800
(396 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375 110 2e-24
AT5G35695.1 | chr5:13869120-13869941 FORWARD LENGTH=212 108 6e-24
AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325 81 9e-16
AT4G10890.1 | chr4:6688833-6692937 FORWARD LENGTH=528 64 1e-10
AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297 64 1e-10
AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149 54 2e-07
AT4G02210.1 | chr4:974320-975917 REVERSE LENGTH=440 49 4e-06
>AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375
Length = 374
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 1 MAAVDFDLRFTYVLAGWEGTAHDAVVLRDALERENGIHVPQGKFYLVDAGYGAKQGFLPP 60
+AA FDLRF YVLAGWEG+A D VL AL R N + VPQGK+Y+VD Y GF+ P
Sbjct: 176 LAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAP 235
Query: 61 FRAVRYHLKEWGNNPVQNEELFNLRHSSLRITVERAFGSLKRRFKVLDDATPFFPFRTQV 120
+ V + +E + +E+FN RH L + R FG+LK RF +L A P +P +TQV
Sbjct: 236 YHGVSTNSRE------EAKEMFNERHKLLHRAIHRTFGALKERFPILLSAPP-YPLQTQV 288
>AT5G35695.1 | chr5:13869120-13869941 FORWARD LENGTH=212
Length = 211
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 69/115 (60%), Gaps = 14/115 (12%)
Query: 10 FTYVLAGWEGTAHDAVVLRDALERENGIHVPQGKFYLVDAGYGAKQGFLPPFRAVRYHLK 69
F YVL+GWEG+AHD+ VL DAL KFYLVD G+ + FL PFR VRYHL+
Sbjct: 25 FIYVLSGWEGSAHDSRVLSDALR----------KFYLVDCGFANRLNFLAPFRGVRYHLQ 74
Query: 70 EWG---NNPVQNEELFNLRHSSLRITVERAFGSLKRRFKVLDDATPFFPFRTQVG 121
E+ +P ELFNLRH SLR +ER FG K RF + A P F ++ Q G
Sbjct: 75 EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPP-FSYKKQAG 128
>AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325
Length = 324
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 1 MAAVDFDLRFTYVLAGWEGTAHDAVVLRDALERENGIHVPQG-KFYLVDAGYGAKQGFLP 59
MA D + FTY+ G G+ +D VL+ A + ++ +P K+YLVD+GY KQG L
Sbjct: 209 MAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLA 268
Query: 60 PFRA-----VRYHLKE--WGNNPVQNEELFNLRHSSLRITVERAFGSLKRRFK 105
P+R+ VRYH+ + +G P ELFN H+SLR +ER F K + +
Sbjct: 269 PYRSSRNRVVRYHMSQFYYGPRPRNKHELFNQCHTSLRSVIERTFRIWKNKME 321
>AT4G10890.1 | chr4:6688833-6692937 FORWARD LENGTH=528
Length = 527
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 21 AHDAVVLRDALEREN-GIHVPQGKFYLVDAGYGAKQGFLPPFRAVRYHLKEWGNN--PVQ 77
+HD VL+ E+ H K+YLV++ Y G+L P R + YHL ++G PV
Sbjct: 71 SHDTKVLKYCARNESFSPHPSNRKYYLVNSVYPTTTGYLGPHRRILYHLGQFGRGGPPVT 130
Query: 78 NEELFNLRHSSLRITVERAFGSLKRRFKVLD 108
+ELFN +H LR ++R FG K ++++LD
Sbjct: 131 VQELFNRKHLDLRSVIDRTFGVWKAKWRILD 161
>AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297
Length = 296
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 MAAVDFDLRFTYVLAGWEGTAHDAVVLRDALERENGIHV-PQGKFYLVDAGYGAKQGFLP 59
+A D D+ FTY G G+ HDA VL A+ + HV P K+YLVD+GY K+G+L
Sbjct: 143 LAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSGYANKRGYLA 202
Query: 60 PFR 62
P+R
Sbjct: 203 PYR 205
>AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149
Length = 148
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 1 MAAVDFDLRFTYVLAGWEGTAHDAVVLRDALER-ENGIHVP 40
+AA +FD+ F YVL+GWEG+AHD+ VL DAL R N + VP
Sbjct: 58 LAACNFDVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPVP 98
>AT4G02210.1 | chr4:974320-975917 REVERSE LENGTH=440
Length = 439
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/118 (18%), Positives = 52/118 (44%)
Query: 133 MSSFMLSHLANIVAGGTRTSSGFKAVHLNACARAVNKRFNSTLTGEQIKNHLKTWQRKFS 192
M + + + + G + F+ N +F S + +KN K+ +R+F+
Sbjct: 190 MDRYFIDLMLDQARRGNQIEGVFRKQAWTEMVNLFNAKFESNFDVDVLKNRYKSLRRQFN 249
Query: 193 KINRLRKVSAAGWDEKNFIITLDDEHYNGYIEDHKADADYFNKPLAHYGEMLTIFGST 250
I + + WD + ++T D+ + YI+ H+ + +P+ +Y ++ + G +
Sbjct: 250 AIKSILRSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDS 307
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,433,070
Number of extensions: 347793
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 8
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)