BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0687300 Os01g0687300|AK122113
         (764 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34550.1  | chr4:16503201-16504040 FORWARD LENGTH=280           51   3e-06

>AT4G34550.1 | chr4:16503201-16504040 FORWARD LENGTH=280
          Length = 279

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 33/161 (20%)

Query: 615 LKRLQHDTSDSHVPCSKKPKV-GDGPLAGGTCTVFGQVFDCDSDSTGMINHVKNKLICKG 673
           +KRL+ + +D+    +K   V  +GP        F  +F       GM N    +   + 
Sbjct: 140 VKRLKTNAADNRGNETKNMMVFEEGPSGKKVNHFFHSIF-------GMTNLGSRRY--QK 190

Query: 674 LTDQQSQEGSPMSAKSLNRWIGRWC----------RGGTPVFHGTSNLERQEAKSGMPSD 723
            +  Q++  +   A+ +N WI RWC          RGG  V    + LE+Q         
Sbjct: 191 FSTSQNKNLNMGEAEDVNPWIQRWCKRKAADVHEPRGGQEVNSNGTVLEKQ--------- 241

Query: 724 DLEGQFPSIAAMAMMGRVMNKLRPCELQKRGPSVVWRTEGL 764
               QFPSIAAMAMM + ++ + P   +K     VW  E L
Sbjct: 242 ----QFPSIAAMAMMRKALSGINPTGCRKTNSLFVWNAEDL 278



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.126    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,489,538
Number of extensions: 685353
Number of successful extensions: 1286
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 658
Effective length of database: 8,200,473
Effective search space: 5395911234
Effective search space used: 5395911234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)