BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0683700 Os01g0683700|AK103030
         (252 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24600.1  | chr5:8421790-8423342 REVERSE LENGTH=249             50   8e-07
AT3G18215.1  | chr3:6240968-6242358 FORWARD LENGTH=245             49   3e-06

>AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249
          Length = 248

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 2  VREEKLDFXXXXXXXXXXXXYHLWLLYAVLRHPTRTVVGLNAIARKRWVTVMM 54
          ++ E LD+            YHLWLLY ++  P+ TVVGLNA  R+ WV  MM
Sbjct: 1  MKREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMM 53



>AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245
          Length = 244

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 1  MVREEKLDFXXXXXXXXXXXXYHLWLLYAVLRHPTRTVVGLNAIARKRWVTVMMA 55
          M  EE LD             YH+WL+YA+L  P  TV+ LNA +R++WV  MM 
Sbjct: 1  MWTEESLDLVLVPTGLVVMVAYHVWLVYAILHRPKLTVIALNAESRRQWVFSMMT 55



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,547,002
Number of extensions: 51629
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)