BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0674700 Os01g0674700|J013107L15
         (514 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30610.1  | chr1:10846676-10850517 FORWARD LENGTH=1007         113   2e-25
AT5G67570.1  | chr5:26952352-26955480 FORWARD LENGTH=799           53   4e-07

>AT1G30610.1 | chr1:10846676-10850517 FORWARD LENGTH=1007
          Length = 1006

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 74/96 (77%)

Query: 419 AFKTFEVFTDVRNRPRVLQMELEDRIQKLASRLNATDVNTPEWKFSKMIHDAKIKFSDHS 478
           AF+  +  +D+ ++P   ++E+EDRI+KLA  LN  D+N PEW+FSK I  AKI+++D++
Sbjct: 412 AFRFSDESSDIVDKPATSRVEMEDRIEKLAKVLNGADINMPEWQFSKAIRSAKIRYTDYT 471

Query: 479 ILRVVQILGRYGNWKRVLQVVEWLQSRERFKSYKSR 514
           ++R++  LG+ GNW+RVLQV+EWLQ ++R+KS K R
Sbjct: 472 VMRLIHFLGKLGNWRRVLQVIEWLQRQDRYKSNKIR 507



>AT5G67570.1 | chr5:26952352-26955480 FORWARD LENGTH=799
          Length = 798

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 45/71 (63%)

Query: 444 IQKLASRLNATDVNTPEWKFSKMIHDAKIKFSDHSILRVVQILGRYGNWKRVLQVVEWLQ 503
           ++ L  RL+  ++N   WKF +M++ + ++F++  +L++V  LGR  +WK+   VV W+ 
Sbjct: 185 VRVLVDRLSGREINEKHWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVY 244

Query: 504 SRERFKSYKSR 514
           S ++ K  +SR
Sbjct: 245 SDKKRKHLRSR 255



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,556,622
Number of extensions: 436024
Number of successful extensions: 1377
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1378
Number of HSP's successfully gapped: 2
Length of query: 514
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 411
Effective length of database: 8,282,721
Effective search space: 3404198331
Effective search space used: 3404198331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)