BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0672400 Os01g0672400|AK061329
(246 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212 103 7e-23
AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224 96 1e-20
AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223 93 1e-19
AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201 79 2e-15
AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222 60 7e-10
AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229 60 9e-10
AT3G06760.2 | chr3:2132971-2134355 FORWARD LENGTH=235 59 3e-09
>AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212
Length = 211
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 61 DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGR 120
+ CP+C ++ DI LC H++ +HP E CP+C +K+ D++ HIT QHG +FK R
Sbjct: 42 EFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQR 101
Query: 121 RMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPXXXXXXXXXXT 180
R R S L ++LR+A LQ+L G + ++NI +DP
Sbjct: 102 RRRLRKGGYSSTYLTLKKELREANLQSLGGSS-----TFIPSSNIDSDP----------- 145
Query: 181 LDSEERSKAP--VPIPDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRATFVQGL 238
L S K P +PI + S+ + +P +S+I S E ++K K ++ FV+GL
Sbjct: 146 LLSSFMFKPPSAIPITEGDSVAQVSPKDTSKSKIQQESFSNEDQEKAK----KSKFVRGL 201
Query: 239 VLSTLFED 246
+ ST+ ED
Sbjct: 202 LWSTMLED 209
>AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224
Length = 223
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 11/188 (5%)
Query: 61 DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGR 120
+ ACP+C + DI SLC H++EDHP E CP+C ++ DM+ HIT+QH +FK R
Sbjct: 43 EFACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHR 102
Query: 121 RMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPXXXXXXXXXXT 180
+ + LS+L R+ D Q+L GG S+++++N++ADP
Sbjct: 103 KRKPRRGGSYSTLSILRREFPDGNFQSLF-GGSSCIVSSSSSSNVAADPLLSSFISPI-- 159
Query: 181 LDSEERSKAPVPIPDDTSIHKDTPAQ--PWESRIDSSLTSEEREQKRKQATDRATFVQGL 238
++ I +T K T Q P ++ +SL++E+ +QK K R+ FV+ L
Sbjct: 160 --ADGFFTTESCISAETGPVKKTTIQCLPEQNAKKTSLSAEDHKQKLK----RSEFVREL 213
Query: 239 VLSTLFED 246
+ ST+ +D
Sbjct: 214 LSSTILDD 221
>AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223
Length = 222
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 111/249 (44%), Gaps = 32/249 (12%)
Query: 1 MDSEHWISSLAAAKRFYAAQ-LGHVDDMAGIXXXXXXXXXXXXXXXXXXXXXXXXXXATW 59
MDS+ W LA+A R Y L D+ G
Sbjct: 1 MDSDSWSDRLASASRRYQLDFLSRSDNFLGFEEIEGEDDFR------------------- 41
Query: 60 PDVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSG 119
+ ACP+C + DI SLC H++EDHP + CPIC K++ DM+ HIT+QH +FK
Sbjct: 42 EEYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVT 101
Query: 120 RRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPXXXXXXXXXX 179
R+ + LS+L R+ D Q+L G R S++ + +ADP
Sbjct: 102 RKRKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVSSSSASI--AADPLLSSFISPM- 158
Query: 180 TLDSEERSKAPVPIPDDTSIHKDTPAQ--PWESRIDSSLTSEEREQKRKQATDRATFVQG 237
+++ + + DTS K T Q P + SL++E+ +K KQ + FVQG
Sbjct: 159 ---ADDFFISESSLCADTSSAKKTLNQSLPERNVEKQSLSAEDHREKLKQ----SEFVQG 211
Query: 238 LVLSTLFED 246
++ S + ED
Sbjct: 212 ILSSMILED 220
>AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201
Length = 200
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 22/187 (11%)
Query: 61 DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGR 120
+ ACP+C E +DI LC H++++H E + CP+C K+ D++ H F GR
Sbjct: 34 EFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAH------KRFTMGR 87
Query: 121 RMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPXXXXXXXXXXT 180
+ + + LSLL ++LR+ LQ LLG R+ + A++++ DP +
Sbjct: 88 KRKSRKSGTNSTLSLLRKELREGDLQRLLGFTS---RNGSVASSVTPDP-------LLSS 137
Query: 181 LDSEERSKAPVPIPDDT-SIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRATFVQGLV 239
S RS++ P P T ++ +D + S ++ ++RE++R ++ FVQ L+
Sbjct: 138 FISPTRSQSS-PAPRQTKNVSEDKQIERKRQVFISPVSLKDREERRH----KSEFVQRLL 192
Query: 240 LSTLFED 246
S +F++
Sbjct: 193 SSAIFDE 199
>AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222
Length = 221
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 38/194 (19%)
Query: 64 CPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGRRMR 123
CP+C D+D+ LC H++E+H +E + CP+C +++ M++HIT H + KS ++
Sbjct: 49 CPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQKEM 108
Query: 124 RFDIPESQALSLLSRDLRDAQLQALL-----GGGHRQRRSNTTA------TNISADPXXX 172
+ E LS D LQ L H Q S + N SA P
Sbjct: 109 SYR--EDPYLS-------DKYLQPHLDELPPSMNHHQHPSKHVSDQFLSFINNSALPNQT 159
Query: 173 XXXXXXXTLDSEERSKAPVPIPDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRA 232
+++ + PI D ++ + T + P L+ ++ +K K +
Sbjct: 160 KLVLPDSSVEDKN------PIKDSSAAKEGTSSCP--------LSDSDKLEKAK----KC 201
Query: 233 TFVQGLVLSTLFED 246
FVQGL+ S +F+D
Sbjct: 202 EFVQGLLSSAMFDD 215
>AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229
Length = 228
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 31/199 (15%)
Query: 61 DVACPYCYEDHDIASLCAHLEEDHPYEPHTS--------------PCPICFEKITRDMLN 106
D CP+C +D+D+ LC H++E+H + + CP+C ++ M++
Sbjct: 42 DYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVCSRRVKMHMVD 101
Query: 107 HITMQHGYLFKSGRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNIS 166
HIT QH +FK R + A S +R + + L H + +
Sbjct: 102 HITTQHRDVFK-----RLYKDESYSAFSPGTRKYLQSLIDEPLSTNHTSKSVLDPLLSFI 156
Query: 167 ADPXXXXXXXXXXTLDSEERSKAPVPIPDDTSIHKDTPAQPWESRIDSSLTSEEREQKRK 226
+P S E S +D S+ +D+ + WES S L+ E +K K
Sbjct: 157 YNPPSPKKSKLVQPDSSSEASM------EDNSLIRDSTEKDWESP--SPLSDTELLEKAK 208
Query: 227 QATDRATFVQGLVLSTLFE 245
+ FVQGL+ S +F+
Sbjct: 209 ----KREFVQGLISSAIFD 223
>AT3G06760.2 | chr3:2132971-2134355 FORWARD LENGTH=235
Length = 234
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 61 DVACPYCYEDHDIASLCAHLEEDHPYEPHTSP-----------CPICFEKITRDMLNHIT 109
+ CP+C ED DI LC H++E+HP E C F ++
Sbjct: 46 EFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVDQFFALVVIQCCNFWFIPCESNLGIFRL 105
Query: 110 MQHGYLFKSGRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADP 169
L+ R R S L+L ++LR+A LQ+LL S T++TNI +DP
Sbjct: 106 FGRSVLYALRGRRLRRGGYSSTYLAL-KKELREANLQSLL----GGSSSFTSSTNIDSDP 160
Query: 170 XXXXXXXXXXTLDSEERSKAPVPIPDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQAT 229
+++ + +K+ P+ + K + + + I + S E ++K K
Sbjct: 161 LLSSFMFNSPSVN-QSANKSATPVTVGNAATKVSIKESLKRDIQEAPLSGEDQEKAK--- 216
Query: 230 DRATFVQGLVLSTLFED 246
++ FV+GL+LST+ ED
Sbjct: 217 -KSEFVRGLLLSTMLED 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,579,755
Number of extensions: 164333
Number of successful extensions: 495
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 7
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)