BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0672100 Os01g0672100|AK102794
(252 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28500.1 | chr4:14083014-14084266 FORWARD LENGTH=306 144 4e-35
AT1G28470.1 | chr1:10010259-10011867 FORWARD LENGTH=315 134 6e-32
AT4G29230.1 | chr4:14410338-14414956 FORWARD LENGTH=499 115 2e-26
AT5G56620.1 | chr5:22918521-22921139 REVERSE LENGTH=387 100 6e-22
AT1G25580.1 | chr1:8997064-8999600 REVERSE LENGTH=450 87 7e-18
AT5G14490.1 | chr5:4670779-4672072 REVERSE LENGTH=351 75 4e-14
AT3G01600.1 | chr3:229365-231105 FORWARD LENGTH=371 69 2e-12
>AT4G28500.1 | chr4:14083014-14084266 FORWARD LENGTH=306
Length = 305
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 86/127 (67%), Gaps = 10/127 (7%)
Query: 1 MTWCNSFNDVRAVENNLATXXXXXXXXXXXXXXXXSQHVNLIKTCPSCGHRAQYEQXXXX 60
MTWCN +DV+ VE + + S V+ KTCPSCGH ++ +
Sbjct: 1 MTWCNDRSDVQTVERIIPSPGAAESPVA-------SLPVSCHKTCPSCGHNFKFHEQAG- 52
Query: 61 XTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEFIPTIEGENGICYTHPE 120
I DLPGLPAGVKFDPTDQE+LEHLEGK R DA+KLHPLIDEFI TI+GENGICYTHPE
Sbjct: 53 --IHDLPGLPAGVKFDPTDQEVLEHLEGKVRDDAKKLHPLIDEFIRTIDGENGICYTHPE 110
Query: 121 RLPGTRQ 127
+LPG +
Sbjct: 111 KLPGVNK 117
>AT1G28470.1 | chr1:10010259-10011867 FORWARD LENGTH=315
Length = 314
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 42 IKTCPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLI 101
I TCPSCGH+ + Q +I+DLP LPAGVKFDP+D+E+L HLE K D RKLHPLI
Sbjct: 50 ITTCPSCGHKLHHHQDDQVGSIKDLPSLPAGVKFDPSDKEILMHLEAKVSSDKRKLHPLI 109
Query: 102 DEFIPTIEGENGICYTHPERLPGTRQ 127
DEFIPT+EGENGICYTHPE+LPG +
Sbjct: 110 DEFIPTLEGENGICYTHPEKLPGVSK 135
>AT4G29230.1 | chr4:14410338-14414956 FORWARD LENGTH=499
Length = 498
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 64/87 (73%), Gaps = 8/87 (9%)
Query: 43 KTCPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLID 102
K CPSCGH+ + + QD GLPAGVKFDPTDQEL+EHLE K K HPLID
Sbjct: 29 KKCPSCGHKLEGKP-------QDWVGLPAGVKFDPTDQELIEHLEAKVLAKDFKSHPLID 81
Query: 103 EFIPTIEGENGICYTHPERLPG-TRQG 128
EFIPTIEGE+GICYTHPE+LPG TR G
Sbjct: 82 EFIPTIEGEDGICYTHPEKLPGVTRDG 108
>AT5G56620.1 | chr5:22918521-22921139 REVERSE LENGTH=387
Length = 386
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 64/101 (63%), Gaps = 12/101 (11%)
Query: 43 KTCPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKAR--PDARKL--- 97
K CP CG Q T + GLPAGVKFDPTDQEL+EHLE K + + +K
Sbjct: 23 KHCPGCGRMIQ------AATKPNWVGLPAGVKFDPTDQELIEHLEAKVKGKEENKKWSSS 76
Query: 98 HPLIDEFIPTIEGENGICYTHPERLPG-TRQGRPDPALLPP 137
HPLIDEFIPTI+GE+GICYTHP++LPG TR G P
Sbjct: 77 HPLIDEFIPTIDGEDGICYTHPQKLPGVTRDGLSKHFFHKP 117
>AT1G25580.1 | chr1:8997064-8999600 REVERSE LENGTH=450
Length = 449
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 45 CPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEF 104
CP C H + D PGLP GVKFDP+D E++ HL K+ HP IDEF
Sbjct: 39 CPKCQHVID-----NSDVVDDWPGLPRGVKFDPSDPEIIWHLLAKSGLSGLSSHPFIDEF 93
Query: 105 IPTIEGENGICYTHPERLPGTR 126
IPT+ ++GICYTHP+ LPG +
Sbjct: 94 IPTVNQDDGICYTHPKNLPGVK 115
>AT5G14490.1 | chr5:4670779-4672072 REVERSE LENGTH=351
Length = 350
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 45 CPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEF 104
C +C +R + PGLP GVKF+PTD+E++EHLE K D K H LI +F
Sbjct: 39 CFNCSYRID-----NSNVLTPWPGLPKGVKFEPTDEEVIEHLEAKCGIDGLKPHLLIQDF 93
Query: 105 IPTIEGENGICYTHPERLPGTRQ 127
I ++ + GI YTHP+ LPG +
Sbjct: 94 ICSVTQDVGINYTHPQNLPGVSK 116
>AT3G01600.1 | chr3:229365-231105 FORWARD LENGTH=371
Length = 370
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 45 CPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEF 104
CP+C +R + PGLP GVKF+PTD++++E LE K + H LI+EF
Sbjct: 36 CPNCTYRID-----NSNVLIPWPGLPKGVKFEPTDEDIIEFLEAKCGIGGSEPHVLIEEF 90
Query: 105 IPTIEGENGICYTHPERLPGTRQ 127
I + + GI YTHP+ LPG +
Sbjct: 91 IRPVTEDVGINYTHPQNLPGANK 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,201,227
Number of extensions: 135184
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 7
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)