BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0664100 Os01g0664100|AK065234
(558 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29820.1 | chr1:10438219-10440625 FORWARD LENGTH=541 607 e-174
AT1G29830.3 | chr1:10441053-10445129 FORWARD LENGTH=569 567 e-162
AT2G42950.1 | chr2:17864059-17866407 FORWARD LENGTH=502 548 e-156
>AT1G29820.1 | chr1:10438219-10440625 FORWARD LENGTH=541
Length = 540
Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust.
Identities = 312/530 (58%), Positives = 380/530 (71%), Gaps = 12/530 (2%)
Query: 5 EGQQPHQVSGVSRAQDGVAKVSLGKEHVPGSELWTDGLICAFELIKGHKKLVQHKSWPTI 64
E + H VS S+++ +K G VP S+LWTDG+ICAFE I+G KK V K
Sbjct: 3 ENGENHSVSQESKSKKLESKNHSG---VPKSDLWTDGIICAFEFIRGPKKHVDSKQLEK- 58
Query: 65 DSMQEKEVPMHMKRHISRNGHHVATMKPEECDVVENPRQTEFANDPSLFKDRPVHVRAIL 124
++++++ P+ S GH+ D+ + + L HV
Sbjct: 59 GALKQEDGPISH----SFPGHNPFVDSSPVDDLRSRSVSSLDFKEAHLLPSG--HVERYE 112
Query: 125 DHKWVPIGWSRIAELVQRVQSDASWDSEPAEMTDSEDDYTVADVAAPYWQRPVGPTWWCH 184
WVPIGW+RI ELVQ VQ +A W + E+ D E+D V D+AAPYW+RP GPTWWCH
Sbjct: 113 GSHWVPIGWARITELVQMVQVNAEWPN--LELIDDEEDVPVTDLAAPYWERPGGPTWWCH 170
Query: 185 VTAGHPSVDAWLNSAHWMHPAIRTALRDESRLISDRMKYLLYEVPVRVAGGLLFELLGQS 244
++AG+ V+ WL SA W+HPAI ALRDES+LIS+RM++LLYEVPVRVAGGLLFELLGQS
Sbjct: 171 LSAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVAGGLLFELLGQS 230
Query: 245 VGDPNREEEDIPIVLRSWQAQNFLVTAMHVKGPSSNINVLGVTEVQELLSAGGSQTPRSA 304
VGDP E+D+P+V RSWQA+NFLV+ MH+KG +N NVLG+TEV+ELL AGG PR+
Sbjct: 231 VGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTNTNVLGITEVEELLYAGGYNVPRTV 290
Query: 305 HEVIAHLIGRLSRWDDRLFRKYVFGEADEIELKFVNRRNHEDLNLVSIILNQEIRRLATQ 364
HEVIAHL RLSRWDDRLFRK +FG ADEIELKF+NRRN+EDLNL SIILNQEIR+L+ Q
Sbjct: 291 HEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNYEDLNLFSIILNQEIRKLSRQ 350
Query: 365 VIRVKWSLHAREEIIIELLRHLRGNTTRVILDSIRKDTREMLEEQEAVRGRLFTIQDVMQ 424
VIRVKWSLHAREEII ELL+HLRGN R +LD +RK+TREMLEEQEAVRGRLFTIQDVMQ
Sbjct: 351 VIRVKWSLHAREEIIFELLQHLRGNIARHLLDGLRKNTREMLEEQEAVRGRLFTIQDVMQ 410
Query: 425 STVRAWLQDRSLRITHNLAIFGGGGMVLSIITGLFGINVDGIPGAQNTPXXXXXXXXXXX 484
S+VRAWLQD+SLR++HNLA+FGG G+VL+II GLFGINVDGIPGAQNTP
Sbjct: 411 SSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFGINVDGIPGAQNTPYAFGLFTFLMV 470
Query: 485 XXXXXXXXXXXXXXXXQNPVTNEKVKVRKLELQDLVSAFQHEAEQHGKVR 534
+ P+T E+V+VRKLELQD+V FQHEAE H ++R
Sbjct: 471 LLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVVKIFQHEAETHAQLR 520
>AT1G29830.3 | chr1:10441053-10445129 FORWARD LENGTH=569
Length = 568
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 295/517 (57%), Positives = 367/517 (70%), Gaps = 17/517 (3%)
Query: 22 VAKVSLGKEHVPGSELWTDGLICAFELIKGHKKLVQHKSWPTIDSMQEKEVPMHMKRHIS 81
V++ S VP S+LWTDG+ICAFE I+G KK V K +++++ P+ RH S
Sbjct: 45 VSQESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLYK-GYLKQEDGPI---RH-S 99
Query: 82 RNGHHVATMKPEECDVVENPRQTEFANDPSLFKDRPV----HVRAILDHKWVPIGWSRIA 137
GH+ P V+ R ++ FK+ V HV WVPIGW+RI
Sbjct: 100 FPGHNPFIDSP----AVDYLRSRSVSSLD--FKEAHVLPSGHVERSEGSHWVPIGWTRIT 153
Query: 138 ELVQRVQSDASWDSEPAEMTDSEDDYTVADVAAPYWQRPVGPTWWCHVTAGHPSVDAWLN 197
+LVQ+VQ +A W + ++ D E+D V D+AAPYW+RP GPTWWCH+TAG+ V+ WL
Sbjct: 154 KLVQQVQVNAEWPN--LKLIDDEEDVPVTDLAAPYWERPGGPTWWCHLTAGNSFVEGWLR 211
Query: 198 SAHWMHPAIRTALRDESRLISDRMKYLLYEVPVRVAGGLLFELLGQSVGDPNREEEDIPI 257
SA W+HPAI ALRDES+LIS+RM++LLYEVPVRV GGLLFELLGQS+GDP E+D+P+
Sbjct: 212 SATWLHPAISLALRDESKLISERMRHLLYEVPVRVDGGLLFELLGQSMGDPVIGEDDVPV 271
Query: 258 VLRSWQAQNFLVTAMHVKGPSSNINVLGVTEVQELLSAGGSQTPRSAHEVIAHLIGRLSR 317
V RSWQA+NFLV+ MH+KG S NVLG+TEV+ELL AG PR+ HEVIAHL RLSR
Sbjct: 272 VFRSWQAKNFLVSVMHIKGNVSKSNVLGITEVEELLYAGSYNVPRTIHEVIAHLACRLSR 331
Query: 318 WDDRLFRKYVFGEADEIELKFVNRRNHEDLNLVSIILNQEIRRLATQVIRVKWSLHAREE 377
WDDRLFRK +FG ADEIELKF+NRRNHEDLNL SIILNQEIR+LA Q IRVKWSLHAREE
Sbjct: 332 WDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFSIILNQEIRKLARQTIRVKWSLHAREE 391
Query: 378 IIIELLRHLRGNTTRVILDSIRKDTREMLEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR 437
II+ELL+HLRGN R +L+ +R +TREMLEEQEAVRGRLFTIQD +QS +R+WLQD+SL
Sbjct: 392 IILELLQHLRGNIPRHLLEGLRNNTREMLEEQEAVRGRLFTIQDNIQSNIRSWLQDQSLN 451
Query: 438 ITHNLAIFGGGGMVLSIITGLFGINVDGIPGAQNTPXXXXXXXXXXXXXXXXXXXXXXXX 497
+HNLAIFGG G+VL+II GLF +N+DG+PG ++TP
Sbjct: 452 GSHNLAIFGGCGLVLTIILGLFSVNLDGVPGVKHTPYAFVLFSVFLVLIGIVLIAFGLRY 511
Query: 498 XXXQNPVTNEKVKVRKLELQDLVSAFQHEAEQHGKVR 534
+ P+T E V+ RKLELQ++V FQHEAE H ++R
Sbjct: 512 LGPKKPITEEHVEARKLELQNVVKIFQHEAETHAQLR 548
>AT2G42950.1 | chr2:17864059-17866407 FORWARD LENGTH=502
Length = 501
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/503 (55%), Positives = 349/503 (69%), Gaps = 42/503 (8%)
Query: 33 PGS-ELWTDGLICAFELIKGHKKLVQHKSWPTIDSMQEKEVPMHMKRHISRNGHHVATMK 91
PG LWT+GLICAFE +G +K + S +G +K
Sbjct: 10 PGYHNLWTNGLICAFEFCQGRRK-----------------------NNTSVHGDSSLRIK 46
Query: 92 PEECDVVENPRQTEFANDPSLFKDRPVHVRAILDHKWVPIGWSRIAELVQRVQSDASWDS 151
+EC+ D + H R+ W IGW RI+ELVQ VQ D +WD
Sbjct: 47 KQECE-----------TDQFGTGEDEEHSRSY----WRGIGWDRISELVQTVQVDNNWDL 91
Query: 152 EPAEMTDSEDDYTVADVAAPYWQRPV-GPTWWCHVTAGHPSVDAWLNSAHWMHPAIRTAL 210
++ ED+ TVA++AAPYW+RP+ GPTWWCH+ A H + +WL +AHW+HPA+ AL
Sbjct: 92 RKIDL--DEDEATVAELAAPYWERPLAGPTWWCHLDATHHGIASWLRNAHWLHPAVSLAL 149
Query: 211 RDESRLISDRMKYLLYEVPVRVAGGLLFELLGQSVGDPNREEEDIPIVLRSWQAQNFLVT 270
RDES+LIS+RMK++ YEVPVRVAGGLLFELLGQS GDP +E+DIPIVLRSWQAQNFLVT
Sbjct: 150 RDESKLISERMKHIFYEVPVRVAGGLLFELLGQSAGDPFIQEDDIPIVLRSWQAQNFLVT 209
Query: 271 AMHVKGPSSNINVLGVTEVQELLSAGGSQTPRSAHEVIAHLIGRLSRWDDRLFRKYVFGE 330
A+HVKG + NI+VLG+TEVQE+L AGG+ PR+ HE+IAHL RL+RWDDRLFRKY+FG
Sbjct: 210 ALHVKGFALNISVLGITEVQEMLIAGGACIPRTVHELIAHLACRLARWDDRLFRKYIFGA 269
Query: 331 ADEIELKFVNRRNHEDLNLVSIILNQEIRRLATQVIRVKWSLHAREEIIIELLRHLRGNT 390
ADE+EL F+N+R +ED NL + ILNQEIRRL+TQVIRVKWSLHAREEI+ ELL+ L+GN
Sbjct: 270 ADEVELMFMNKRLYEDPNLFTTILNQEIRRLSTQVIRVKWSLHAREEIVFELLQQLKGNR 329
Query: 391 TRVILDSIRKDTREMLEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRITHNLAIFGGGGM 450
T+ +L+ I+K TR+M+ EQEAVRGRLFTIQDVMQ+TVRAWLQD+SL +THNL IFGG G+
Sbjct: 330 TKDLLEGIKKSTRDMINEQEAVRGRLFTIQDVMQNTVRAWLQDQSLTVTHNLGIFGGVGL 389
Query: 451 VLSIITGLFGINVDGIPGAQNTPXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPVTNEKVK 510
+++I+TGLFGINVDGIPGA++ P + PV E V+
Sbjct: 390 LITIVTGLFGINVDGIPGAKDFPQAFALFSVVLFVSGLVLVVAGLIYLGLKEPVAEENVE 449
Query: 511 VRKLELQDLVSAFQHEAEQHGKV 533
RKLEL ++V FQ EAE H +V
Sbjct: 450 TRKLELDEMVKKFQQEAESHAQV 472
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,286,854
Number of extensions: 454974
Number of successful extensions: 1073
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 3
Length of query: 558
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 454
Effective length of database: 8,255,305
Effective search space: 3747908470
Effective search space used: 3747908470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)