BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0658900 Os01g0658900|U42208
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46270.1 | chr2:19000859-19002901 FORWARD LENGTH=383 163 1e-40
AT4G01120.1 | chr4:481929-483970 REVERSE LENGTH=361 145 3e-35
AT4G36730.1 | chr4:17309850-17311752 REVERSE LENGTH=316 120 1e-27
AT2G35530.1 | chr2:14923280-14926025 REVERSE LENGTH=410 90 2e-18
AT1G32150.1 | chr1:11566022-11568317 FORWARD LENGTH=390 65 7e-11
>AT2G46270.1 | chr2:19000859-19002901 FORWARD LENGTH=383
Length = 382
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 201/397 (50%), Gaps = 54/397 (13%)
Query: 1 MGN--DEAVVTQKMGKAPSPPKDHPALSPYLDWSNMQAYYGPGI-LPPTFFSPGIAAGHT 57
MGN +E K K SPP D + Y DW+ MQAYYGP + +PP + S A+GH
Sbjct: 1 MGNSSEEPKPPTKSDKPSSPPVDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHP 60
Query: 58 PPPFILGPQPLVPSAFGKPYAAIYPPGGA-FSHPFMPLMVSP--------------LSME 102
PPP++ PQ ++ S +G PYAA+YP GG ++HP +P+ P LS++
Sbjct: 61 PPPYMWNPQHMM-SPYGAPYAAVYPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSID 119
Query: 103 -PAKSVNSKDSCSNKKMKEIDGAAVSTGSGNSE-------KTSGDCSLEGSSDGNNQKAS 154
P KS + D+ KK+KE DG A+S G+GN E ++ +GS+DG++ +
Sbjct: 120 TPTKSTGNTDNGLMKKLKEFDGLAMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTT 179
Query: 155 GT--PK-KRSIDDRP-KSGVETGGALTPNDRPSEQAALPNLCIPVTA--IKPDVSTASD- 207
G PK KRS + P K G + A + + I + + P VS S+
Sbjct: 180 GADEPKLKRSREGTPTKDGKQLVQASSFHSVSPSSGDTGVKLIQGSGAILSPGVSANSNP 239
Query: 208 --FRVIATPVTEVPTKDDXXXXXXXXXXXXXXXARRSRLRKQAETEELARKVELLTAENT 265
+ +A E +++ ARRSRLRKQAETEELARKVE LTAEN
Sbjct: 240 FMSQSLAMVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENM 299
Query: 266 SLRREISRLTESSKKLRLENSALMEKLTETGPDEAQEVPPVKTKAQQARGVENFLSMIDK 325
+LR E+++L E S KLR N+ L++KL + P+ + VP N LS +
Sbjct: 300 ALRSELNQLNEKSDKLRGANATLLDKLKCSEPE--KRVP------------ANMLSRVKN 345
Query: 326 TGT---PRSSGHMDHAIATPKLRQLLGSGLATDAVAA 359
+G ++ G D + +T KL QLL + AVAA
Sbjct: 346 SGAGDKNKNQGDND-SNSTSKLHQLLDTKPRAKAVAA 381
>AT4G01120.1 | chr4:481929-483970 REVERSE LENGTH=361
Length = 360
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 71/366 (19%)
Query: 28 YLDWSNMQAYYGPGILPPTFFSPGIAAGHTPPPFILG-PQPLVPSAFGKPYAAIYPPGGA 86
+ DW+ MQAYYGP + P +++ +A GH PPP++ P P++ + +G PY PPGG
Sbjct: 31 HHDWAAMQAYYGPRVGIPQYYNSNLAPGHAPPPYMWASPSPMM-APYGAPYPPFCPPGGV 89
Query: 87 FSHPFMPL--------------MVSPLSME-PAKSVNSKDSCSNKKMKEIDGAAVSTGSG 131
++HP + + + +PL+++ PA S + D KK+KE DG A+S +
Sbjct: 90 YAHPGVQMGSQPQGPVSQSASGVTTPLTIDAPANSAGNSDHGFMKKLKEFDGLAMSISNN 149
Query: 132 N-------------SEKTSGDCSLEGSSDGNNQKASGTPKKRSIDDRPKSGVETGGALTP 178
S+ + D S G SDGN + +KR P +G
Sbjct: 150 KVGSAEHSSSEHRSSQSSENDGSSNG-SDGNTTGGEQSRRKRRQQRSPSTG--------- 199
Query: 179 NDRPSEQAALP----NLCIPVTAIKPDVSTASDFRVIATPVTEVPT-KDDXXXXXXXXXX 233
+RPS Q +LP N VT P + TA F+ A + VP ++
Sbjct: 200 -ERPSSQNSLPLRGENEKPDVTMGTPVMPTAMSFQNSAG-MNGVPQPWNEKEVKREKRKQ 257
Query: 234 XXXXXARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLT 293
ARRSRLRKQAETE+L+ KV+ L AEN SLR ++ +L S+KLRLEN A++++L
Sbjct: 258 SNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQL- 316
Query: 294 ETGPDEAQEVPPVKTKAQQARGVENFLSMIDKTGTPRSSGHMDHAIATPKLRQLLGSGLA 353
KAQ EN +S +DK + S + H QLL +
Sbjct: 317 ---------------KAQATGKTENLISRVDKNNSVSGSKTVQH--------QLLNASPI 353
Query: 354 TDAVAA 359
TD VAA
Sbjct: 354 TDPVAA 359
>AT4G36730.1 | chr4:17309850-17311752 REVERSE LENGTH=316
Length = 315
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 24/278 (8%)
Query: 26 SPYLDWSN-MQAYYGPGILPPTFFSPGIAAGHTPPPFILGPQPLVPSAFGKP--YAAIYP 82
+PY DW N MQAYYG G P FF P +P P++ G Q + +G P Y A+YP
Sbjct: 25 TPYPDWQNSMQAYYGGGGTPNPFF-PSPVGSPSPHPYMWGAQHHMMPPYGTPVPYPAMYP 83
Query: 83 PGGAFSHPFMPL--MVSPLSMEPAKSVNSKDSCSNKKMKEIDGAAVS-TGSGNSEKTSGD 139
PG ++HP MP+ P + EPAK S K+ +G + +GSGN + D
Sbjct: 84 PGAVYAHPSMPMPPNSGPTNKEPAKDQASGKKSKGNSKKKAEGGDKALSGSGNDGASHSD 143
Query: 140 CSL-EGSSDGN----NQKASGTPKKRSIDDRPKSGVETGGALTPNDRPSEQAALPNLCIP 194
S+ GSSD N NQ+ G+ +K S G + + +P
Sbjct: 144 ESVTAGSSDENDENANQQEQGSIRKPSF-----------GQMLADASSQSTTGEIQGSVP 192
Query: 195 VTAIKPDVSTASDFRVIATPVTEVPTKDDXXXXXXXXXXXXXXXARRSRLRKQAETEELA 254
+ + P + + ++ VP KD+ ARRSRLRKQAE E+L
Sbjct: 193 MKPVAPGTNLNIGMDLWSSQAG-VPVKDERELKRQKRKQSNRESARRSRLRKQAECEQLQ 251
Query: 255 RKVELLTAENTSLRREISRLTESSKKLRLENSALMEKL 292
++VE L+ EN SLR E+ RL+ KL+ EN+++ ++L
Sbjct: 252 QRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDEL 289
>AT2G35530.1 | chr2:14923280-14926025 REVERSE LENGTH=410
Length = 409
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 144/343 (41%), Gaps = 91/343 (26%)
Query: 30 DWSNMQAYYGPGILPPTFFSPGIAAGHTPPPFILGPQPLVPSAFG---KPYAAIYPPGGA 86
DWS QAY + PP + +A+ P P++ G Q ++P +G PY A+YPPGG
Sbjct: 43 DWSGFQAYSP--MPPPHGY---VASSPQPHPYMWGVQHMMP-PYGTPPHPYVAMYPPGGM 96
Query: 87 FSHPFMP---------LMVSPLSMEPAKSVNSKDSCSNKKMKEI---------------- 121
++HP MP M SP M + + + K E+
Sbjct: 97 YAHPSMPPGSYPYSPYAMPSPNGMTEVSGNTTGGTDGDAKQSEVKEKLPIKRSRGSLGSL 156
Query: 122 -------------DGAAVSTGSGNSEKTSGDCSLEGSSDGNNQKASGT------PKKRSI 162
GA+ + S +++ D S EG SDGN+Q SG+ + S
Sbjct: 157 NMITGKNNEPGKNSGASANGAYSKSGESASDGSSEG-SDGNSQNDSGSGLDGKDAEAASE 215
Query: 163 DDRPKSGVETGGALTP--------NDRPSEQAALP----NLCI-------PVTAIKPDVS 203
+ +G + G A TP P A +P NL I P +A P +
Sbjct: 216 NGGSANGPQNGSAGTPILPVSQTVPIMPMTAAGVPGPPTNLNIGMDYWGAPTSAGIPGM- 274
Query: 204 TASDFRVIATPVTEVPT-------------KDDXXXXXXXXXXXXXXXARRSRLRKQAET 250
++TPV V +DD ARRSRLRKQAE
Sbjct: 275 ----HGKVSTPVPGVVAPGSRDGGHSQPWLQDDRELKRQRRKQSNRESARRSRLRKQAEC 330
Query: 251 EELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLT 293
+ELA++ E+L ENT+LR EI++L ++L EN++L ++L+
Sbjct: 331 DELAQRAEVLNEENTNLRAEINKLKSQCEELTTENTSLKDQLS 373
>AT1G32150.1 | chr1:11566022-11568317 FORWARD LENGTH=390
Length = 389
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 41/55 (74%)
Query: 239 ARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLT 293
ARRSRLRKQAE +ELA++ E+L EN+SLR EI++L ++L ENS+L K +
Sbjct: 309 ARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAENSSLKNKFS 363
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 30 DWSNMQAYYGPGILPPTFFSPGIAAGHTPPPFILGPQPLVPSAFG---KPYAAIYPPGGA 86
DWS QAY +PP + +A+ P P++ G Q ++P +G PY +YPPGG
Sbjct: 48 DWSGFQAY---SPMPPHGY---VASSPQPHPYMWGVQHMMP-PYGTPPHPYVTMYPPGGM 100
Query: 87 FSHPFMPLMVSPLS 100
++HP +P P S
Sbjct: 101 YAHPSLPPGSYPYS 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,167,504
Number of extensions: 383027
Number of successful extensions: 1943
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1936
Number of HSP's successfully gapped: 6
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 112 (47.8 bits)