BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0655500 Os01g0655500|AK120660
         (650 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53450.1  | chr5:21689204-21692242 FORWARD LENGTH=671          691   0.0  

>AT5G53450.1 | chr5:21689204-21692242 FORWARD LENGTH=671
          Length = 670

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/589 (56%), Positives = 425/589 (72%), Gaps = 12/589 (2%)

Query: 65  VVRFEMGDFDVADRVSVGLHGRSDEMIFEATVRDPSSELYGSTVVLRQLMSFQAKRRGRR 124
           V++F+  DF + DRVS+G  GR+DE++FEA V+ P S L+   VVLR+L + +A+RRGRR
Sbjct: 80  VMQFKWSDFRILDRVSIGHGGRADELVFEAIVQVPDSPLFNQGVVLRKLNTTRAQRRGRR 139

Query: 125 ALEVLKKLARRQMMYHSYAMQVHGYVTPGNDVEQDDGSFILVHGYHGSYSLRHWLQLSDW 184
           A+EV KKL RR+++YHSY+MQVHGY+T  N++  D  SF LVHG HGS+S+RHWLQ SDW
Sbjct: 140 AIEVFKKLVRRRLLYHSYSMQVHGYIT--NNLSDDQYSFTLVHGCHGSFSIRHWLQQSDW 197

Query: 185 LPTLEATLALDEEQVRRVGDDSVGGPAVTRQXXXXXXXXXXXXXGVNYLHSHGLAHTELR 244
           +PTLEATLALDEE  RRVGDD+ GGPAV+RQ             GVNYLHSHGLAHTELR
Sbjct: 198 IPTLEATLALDEESFRRVGDDTTGGPAVSRQLRLIRTLMRDILIGVNYLHSHGLAHTELR 257

Query: 245 LENVHVSPIDKHVKVGILGNAVDFHDNDPRNSTLASNDERRKMMIAFDMRCVGFIMAKMV 304
           LENVH+SP+D+H+KVGILGNA DF+ + P  S   S  +RR+MMIAFDMRCVGF+MAKMV
Sbjct: 258 LENVHISPVDRHIKVGILGNAADFNGDVPSTSNAYSTMDRRQMMIAFDMRCVGFMMAKMV 317

Query: 305 LRELMDSSTFLKFKSFLTKGDDPACLREFLLPILCRNSPSGNIGLQMLDRQWGAGWNXXX 364
           L+ELMD   F K KSFL KG+DP+ LREF +  L  NS SGN G+Q+LDR WGAGW+   
Sbjct: 318 LQELMDPLIFAKLKSFLAKGNDPSSLREFFVTTLNTNSESGNTGVQILDRNWGAGWHLLS 377

Query: 365 XXXXTKPDKRISCVDALRHPFLCGPKWRINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRR 424
               T+P +RISC+DAL+HPFLCGP+WR+ PS+D+IRWGLGSTAV+++E+YIY   QR+R
Sbjct: 378 LLIATRPSERISCLDALKHPFLCGPRWRVAPSMDIIRWGLGSTAVKISEEYIYRMPQRQR 437

Query: 425 LAYFVELMEVLNPNPRTENWLNILPGHWRLLYCTGRHIGLTLRQPSPRILITDVFLTFAQ 484
           LA+F+ LME+LNP P+   WL +LPG WRLLY TG+HIGLTLRQPS R LI +V LT  +
Sbjct: 438 LAHFIGLMEMLNPYPKPNCWLELLPGRWRLLYSTGKHIGLTLRQPSTRALIGNVHLTITR 497

Query: 485 TSDSIDPV-FSLTSDIGFKIMAESDWPHDKSGSEGTLSVTSSARIATG-RIYIHEQDGD- 541
            S+SI+    S TSDI F  +   DWPH+K G+ G L   S  R+  G R+Y+ E+  + 
Sbjct: 498 ASESINNTSLSFTSDIRFTAITSKDWPHNKIGAAGKLQTLSQFRLIAGKRLYLKEEKKNI 557

Query: 542 -----DXXXXXXXXXXXXXXGKWRKVSKMKELPASLPTVNITMDELDVSMSCSSTLNVSS 596
                                KW+KV   KE P+SLP   +   E++V+M+ +   ++ S
Sbjct: 558 GKFSMGEPDAEEGLAEKLETEKWKKVVPFKEFPSSLPVAKLVSGEIEVTMNMND--HIDS 615

Query: 597 AQKVLQEIRTQTPPEMFDLSKIVCGTYVDARLMILRGVNGSALFFTRSN 645
              V+ E+R Q PPEMFDLSK+VCGTY+D+RL++LR VNGSAL FTRS+
Sbjct: 616 PGSVIGEVRKQIPPEMFDLSKLVCGTYIDSRLLVLRCVNGSALLFTRSS 664



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,632,002
Number of extensions: 502666
Number of successful extensions: 1127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1124
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 545
Effective length of database: 8,227,889
Effective search space: 4484199505
Effective search space used: 4484199505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)