BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0652300 Os01g0652300|AK063136
(129 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06250.1 | chr1:1913339-1914850 REVERSE LENGTH=424 62 9e-11
AT2G31100.1 | chr2:13256738-13258174 REVERSE LENGTH=415 62 9e-11
AT1G51440.1 | chr1:19070971-19072554 FORWARD LENGTH=528 61 2e-10
AT4G18550.1 | chr4:10225006-10226862 REVERSE LENGTH=420 59 1e-09
AT2G42690.1 | chr2:17776356-17777682 REVERSE LENGTH=413 55 9e-09
AT1G06800.1 | chr1:2089538-2091443 REVERSE LENGTH=516 52 1e-07
AT2G30550.2 | chr2:13014884-13017005 FORWARD LENGTH=530 49 6e-07
>AT1G06250.1 | chr1:1913339-1914850 REVERSE LENGTH=424
Length = 423
Score = 62.0 bits (149), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 71 FKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHWKL 117
FKLE+ RD++LVNK +DALK+EY VP +W +KGM++ DG WKL
Sbjct: 346 FKLEIGRDISLVNKGLDALKDEYLVPSTWRCLANKGMLQMDDGTWKL 392
>AT2G31100.1 | chr2:13256738-13258174 REVERSE LENGTH=415
Length = 414
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 71 FKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHWKL 117
FKLE++RD+ALVNK +DAL+++Y VP W V +KGMV+ DG WKL
Sbjct: 345 FKLEINRDIALVNKGLDALEDKYLVPGHWWVLENKGMVQSDDGTWKL 391
>AT1G51440.1 | chr1:19070971-19072554 FORWARD LENGTH=528
Length = 527
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 32/49 (65%)
Query: 71 FKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHWKLMD 119
F L RD+ALVNK+ D L+ EYHVPP W +KGMV+ DG W L D
Sbjct: 446 FCLVTKRDIALVNKSCDFLRGEYHVPPCWRQDENKGMVKNGDGQWVLPD 494
>AT4G18550.1 | chr4:10225006-10226862 REVERSE LENGTH=420
Length = 419
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 71 FKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHWKLMDYE 121
F+L+V+R + LVNK+VD LK+E VP W V ++KGM + DG W+L+D+E
Sbjct: 360 FRLDVERAIGLVNKSVDGLKDECMVPGKWRVLKNKGMAQQDDGSWELVDHE 410
>AT2G42690.1 | chr2:17776356-17777682 REVERSE LENGTH=413
Length = 412
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 71 FKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHWKLMDYEGE 123
FKL V R +ALVNK+ + LK E VP SW V+++KG+++ DG W L E E
Sbjct: 355 FKLMVKRSIALVNKSCEFLKAECLVPGSWWVEKNKGLIKNEDGEWVLAPVEEE 407
>AT1G06800.1 | chr1:2089538-2091443 REVERSE LENGTH=516
Length = 515
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 71 FKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHW 115
F L RD ALVNK D LK+ + VPP W +KGMVR DG W
Sbjct: 441 FVLSSGRDPALVNKASDFLKDHFMVPPYWRQDANKGMVRNTDGRW 485
>AT2G30550.2 | chr2:13014884-13017005 FORWARD LENGTH=530
Length = 529
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 71 FKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHW 115
F L RD ALVNK D LKE +PP W +KGMVR ++G W
Sbjct: 456 FVLSSGRDHALVNKASDFLKEHLQIPPFWRQDANKGMVRNSEGRW 500
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,499,390
Number of extensions: 43134
Number of successful extensions: 72
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 7
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 106 (45.4 bits)