BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0641700 Os01g0641700|AK103294
         (269 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02420.1  | chr3:496179-498772 REVERSE LENGTH=349              251   2e-67

>AT3G02420.1 | chr3:496179-498772 REVERSE LENGTH=349
          Length = 348

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/249 (48%), Positives = 169/249 (67%), Gaps = 2/249 (0%)

Query: 22  DNATSPDSDGTNSAGPARSRIALQLDQRSLHFSVTAWVLIVALIGILPLTPRQLQYKGYR 81
           ++ + P + G  SA    +  +++ D++++ FSV AWV ++A++ +LPL P+ L  + YR
Sbjct: 101 NSGSVPRTSGP-SATTGATPSSMRWDEQTIQFSVNAWVFVIAVLAVLPLIPKNLSNRAYR 159

Query: 82  LSLLGTTCTTGYALFAFYRLPRAGNMHAAQI-FHHVASSKDFIPFMYCLMFVMSKLHLKL 140
           LS +GT C++ Y+L++ Y  PRA NM   Q+ F  + ++KDFI F+YCL FV S L LK 
Sbjct: 160 LSFMGTACSSLYSLYSLYGRPRAWNMQGLQVYFQSIVAAKDFIYFIYCLTFVTSHLCLKF 219

Query: 141 VLVPVICWALEHVARFLRRHFTNSSLYRTYLEKPCTWVETNTTAVKFLSSNAEXXXXXXX 200
            L+P++C ALE VA+FLRR+F  S++YR YLE PC WVE+NTT +  LSS AE       
Sbjct: 220 ALIPILCRALEQVAKFLRRNFGRSTIYRKYLEDPCVWVESNTTTLNILSSQAEIAIGFLL 279

Query: 201 XXXXXXRQRNPMQTFMYWQLLKLMYHSPFTAGYHRAIWLKIGRTVNPYIHRYTPFLHDPI 260
                  QRN +QTFMYWQLLKLMY +P TAGYH++ W +IGRTV P I RY PFL+ P+
Sbjct: 280 IISLLSWQRNIIQTFMYWQLLKLMYQAPVTAGYHQSTWSRIGRTVTPIIQRYAPFLNTPV 339

Query: 261 NAGMRWWFR 269
           +A  RWWFR
Sbjct: 340 SAVQRWWFR 348



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,251,792
Number of extensions: 186527
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)