BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0637600 Os01g0637600|AK106980
         (269 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14660.1  | chr5:4727129-4728671 REVERSE LENGTH=274            293   5e-80
AT1G15390.1  | chr1:5294653-5295625 FORWARD LENGTH=270             89   2e-18

>AT5G14660.1 | chr5:4727129-4728671 REVERSE LENGTH=274
          Length = 273

 Score =  293 bits (751), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 172/208 (82%)

Query: 62  EDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGL 121
           +D+  A+A D+QFE PLK+V+YPDPILRA+NKRI+ FD+NL++L D MFDVMYKTDGIGL
Sbjct: 65  KDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGL 124

Query: 122 SAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRP 181
           SAPQVG+NVQLMVFNPAG  GEG+EIVLVNP + K S +L+ ++EGCLSFPGIYA VVRP
Sbjct: 125 SAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRP 184

Query: 182 DNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEK 241
            +VKIDA+D+TG +  + LS L AR+FQHE+DHL+G+LFFDRM+  VL+S+RE L+ LEK
Sbjct: 185 QSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEK 244

Query: 242 KYEESTGLVSPESIENYKGRKDLISFSR 269
           KYEE TGL SPE +E  + RK  + F +
Sbjct: 245 KYEEKTGLPSPERVEARQKRKAGVGFGK 272



>AT1G15390.1 | chr1:5294653-5295625 FORWARD LENGTH=270
          Length = 269

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 17/163 (10%)

Query: 79  KVVKYPDPILRARNKRINTFD---DNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMV- 134
           ++V   DP+L  + + ++  +   + ++ + D+M  VM    G+GL+APQ+GV ++++V 
Sbjct: 82  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141

Query: 135 --------FNP-----AGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRP 181
                   + P     A  +   + +V+VNPV+ + S +  ++ EGCLS  G  A V R 
Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201

Query: 182 DNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRM 224
             V +   D  G +I+V  SG  AR+ QHE DHL G L+ D+M
Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKM 244



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,795,070
Number of extensions: 201105
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)