BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0634900 Os01g0634900|Os01g0634900
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10860.1 | chr5:3429173-3430142 REVERSE LENGTH=207 181 4e-46
AT1G47271.1 | chr1:17328856-17330343 FORWARD LENGTH=194 176 1e-44
AT2G36500.1 | chr2:15318473-15320083 FORWARD LENGTH=537 51 7e-07
AT5G50530.1 | chr5:20571876-20574922 REVERSE LENGTH=549 51 8e-07
AT5G50640.1 | chr5:20605218-20608264 REVERSE LENGTH=549 51 8e-07
AT3G52950.1 | chr3:19634866-19636536 FORWARD LENGTH=557 50 9e-07
AT5G63490.1 | chr5:25418716-25421970 REVERSE LENGTH=544 49 2e-06
>AT5G10860.1 | chr5:3429173-3430142 REVERSE LENGTH=207
Length = 206
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 142/206 (68%), Gaps = 6/206 (2%)
Query: 56 GITKALRFHGKQLKLTVLQHM---NKGIFSWATLISRIQTESPTVIIPHIGLENIRVREI 112
G+ ++ G +K +VLQH+ N I + SR ++ P + G E+ + ++
Sbjct: 3 GVIRSFVSGGNVVKGSVLQHLRVINPAIQP-SVFCSRSESTQPARM-EESGFESTTISDV 60
Query: 113 LNAKGEAKAGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKI 172
+ +KG++ G+ WC T V++A+K MT HNVGALVV+K G+++ LAGI+TERD+ RKI
Sbjct: 61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120
Query: 173 LLPGRPSEETRVGDIMTEEDKLITVSSNTNILQAMELMTERHIRHVPVFDEK-VVGMITI 231
++ GR S+ T+VGDIMTEE+KLITV+ T +L+AM+LMT+ IRH+PV +K ++GM++I
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180
Query: 232 GDVVKTIVDQQHQEVKQLKKYIRGDY 257
GDVV+ +V + +E+++L YI+G Y
Sbjct: 181 GDVVRAVVHEHREELQRLNAYIQGGY 206
>AT1G47271.1 | chr1:17328856-17330343 FORWARD LENGTH=194
Length = 193
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Query: 100 PHIGLENIRVREILNAKGEAKAGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQL 159
P GLEN+ V ++L+ K + C T+ V +A+K+M HN+G+LVVL+ GD++ +
Sbjct: 36 PEKGLENLTVADVLSTK-DTDIDTWISCRTNDTVSDAVKNMAKHNIGSLVVLEPGDQQYI 94
Query: 160 AGIVTERDFARKILLPGRPSEETRVGDIMTEEDKLITVSSNTNILQAMELMTERHIRHVP 219
AGIVTERD+ +KI+ GR S+ T+VG++MT+E KL+TVSS TNI++AM+LM+E HIRHVP
Sbjct: 95 AGIVTERDYMKKIIGAGRSSKLTKVGEVMTDESKLVTVSSGTNIIKAMQLMSENHIRHVP 154
Query: 220 VFDEKVVGMITIGDVVKTIVDQQHQEVKQLKKYIRGDYY 258
V D K+VG+I++ DVVK IVD Q+ E+K+L ++I+GDYY
Sbjct: 155 VIDGKIVGLISMVDVVKAIVDHQNGELKRLNEFIKGDYY 193
>AT2G36500.1 | chr2:15318473-15320083 FORWARD LENGTH=537
Length = 536
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 133 VHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSEETRVGDIMTEED 192
V +A + M A V A VL + L+GIVT++D A +++ G E T V +MT
Sbjct: 79 VFDACRRMAARRVDA--VLLTDSSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMTRNP 136
Query: 193 KLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD 240
I V+S++ ++A++ M + RH+PV + V I + D+ K + D
Sbjct: 137 --IFVTSDSLAIEALQKMVQGKFRHLPVVENGEV--IALLDITKCLYD 180
>AT5G50530.1 | chr5:20571876-20574922 REVERSE LENGTH=549
Length = 548
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 130 SHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSEETRVGDIMT 189
S + EA + M A V AL++ S L GI+T+RD A K++ EET V +MT
Sbjct: 77 STTLFEACRRMAARRVDALLLTDSN--ALLCGILTDRDIATKVIAKQLNLEETPVSKVMT 134
Query: 190 EEDKLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD 240
+ + V S+T ++A++ M + RH+PV + V I + D+ K + D
Sbjct: 135 KNP--VFVLSDTIAVEALQKMVQGKFRHLPVVENGEV--IALLDIAKCLYD 181
>AT5G50640.1 | chr5:20605218-20608264 REVERSE LENGTH=549
Length = 548
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 130 SHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSEETRVGDIMT 189
S + EA + M A V AL++ S L GI+T+RD A K++ EET V +MT
Sbjct: 77 STTLFEACRRMAARRVDALLLTDSN--ALLCGILTDRDIATKVIAKQLNLEETPVSKVMT 134
Query: 190 EEDKLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD 240
+ + V S+T ++A++ M + RH+PV + V I + D+ K + D
Sbjct: 135 KNP--VFVLSDTIAVEALQKMVQGKFRHLPVVENGEV--IALLDIAKCLYD 181
>AT3G52950.1 | chr3:19634866-19636536 FORWARD LENGTH=557
Length = 556
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 133 VHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSEETRVGDIMTEED 192
V +A + M A V A ++ S L+GIVT++D A +++ G ++T V +MT
Sbjct: 81 VFDACRRMAARRVDACLLTDSS--ALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNP 138
Query: 193 KLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD 240
I V+S++ L+A++ M + RH+PV + V I + D+ K + D
Sbjct: 139 --IFVTSDSLALEALQKMVQGKFRHLPVVENGEV--IALLDITKCLYD 182
>AT5G63490.1 | chr5:25418716-25421970 REVERSE LENGTH=544
Length = 543
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 133 VHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTERDFARKILLPGRPSEETRVGDIMTEED 192
++EA K M + V AL++ S + L GI+T++D A +++ EET V +MT+
Sbjct: 72 IYEACKRMASRRVDALLLTDSNE--MLCGILTDKDIATRVISQELNVEETPVSKVMTKNP 129
Query: 193 KLITVSSNTNILQAMELMTERHIRHVPVFDEKVVGMITIGDVVKTIVD 240
+ S T ++A++ M + RH+PV + V I + D+ K + D
Sbjct: 130 MFVL--SETLAVEALQKMVQGKFRHLPVVENGEV--IALLDIAKCLYD 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,792,222
Number of extensions: 172960
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 7
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)