BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0632300 Os01g0632300|Os01g0632300
         (475 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40520.2  | chr5:16231515-16234276 REVERSE LENGTH=694          107   1e-23

>AT5G40520.2 | chr5:16231515-16234276 REVERSE LENGTH=694
          Length = 693

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 158/305 (51%), Gaps = 27/305 (8%)

Query: 96  ESYVRSDEVSCEKVIAHVEKCFDFQSDGYSHHIVQDGLQFFKLQKGKDGSLSPQGLADMQ 155
           ES +R D++  E + + VE+ F F     +  +V + +Q  +L+             D++
Sbjct: 57  ESLLREDDIFYETIKSRVEEAFGF---CKNQQVVCNDVQQKELK-----------FCDLE 102

Query: 156 LI--INKLSNEALHSVANIVTHNRVSFEKTRPAMNKIIEDHLPQYLANLRD----ENDMS 209
           L+  ++ L+N+ L+ +A I+T    SF+KTR  M +II D + +     ++    E  ++
Sbjct: 103 LVRKLDSLTNKGLYLIAMILTGGSTSFDKTRLKMKEIIRDSVRRDFGKNKEGIGKEEIIN 162

Query: 210 QLSHILTNSFSCRSN-SLNIA-TPISPKMLSSINQALNVLGTLTIQSLVAMKRKLDEISF 267
           QL  +L++  + R +  +N+  TP       +  + LN L +L+ Q+L AMKRKL     
Sbjct: 163 QLHQVLSDPANFREDCRMNLGRTPTLHSHRDAAMKVLNELDSLSTQTLRAMKRKLKGSRM 222

Query: 268 TPKFSFVPRISRKAHMVTVIRKQCNKMISRVGESGDLPKNLAKALSVVNLYRKQELKCMD 327
            P+     R  R++ ++  +R+   KM+S +     L + LAKALSVV+L  K       
Sbjct: 223 IPQLKNSRRGQRRSDLINQVRQASEKMLSELSAGDKLQEQLAKALSVVDLSLKLSPGYKT 282

Query: 328 ISQAEFFPFSKKAIFLQNDVLNAIWSIQKLKKGDLKLLRPIL---CQGSNDEMLFKTTVR 384
            +  +FF FS +   LQN+++ A+W ++K++  +LK L   L    + SND +  ++ VR
Sbjct: 283 AAATDFFRFSPETKNLQNEIVKAVWLLRKVRFRELKRLHLCLDPEAEVSNDSL--RSAVR 340

Query: 385 RVIYQ 389
           + + +
Sbjct: 341 KTLIE 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,000,364
Number of extensions: 410510
Number of successful extensions: 1047
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 373
Effective length of database: 8,310,137
Effective search space: 3099681101
Effective search space used: 3099681101
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)