BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0626300 Os01g0626300|AK122071
         (80 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64220.1  | chr1:23833088-23833321 REVERSE LENGTH=78            53   3e-08
AT5G41685.1  | chr5:16669419-16669646 REVERSE LENGTH=76            53   4e-08

>AT1G64220.1 | chr1:23833088-23833321 REVERSE LENGTH=78
          Length = 77

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 50 VAAHYGFIPLIIVVGMRSEPRPSLAQLLSPV 80
          VA HYGFIPLII++GM S+P+P L  LLSPV
Sbjct: 47 VATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77



>AT5G41685.1 | chr5:16669419-16669646 REVERSE LENGTH=76
          Length = 75

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 25/31 (80%)

Query: 50 VAAHYGFIPLIIVVGMRSEPRPSLAQLLSPV 80
          V  HYGFIPL+I VGM S+P+P L QLLSPV
Sbjct: 45 VVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,163,999
Number of extensions: 19990
Number of successful extensions: 26
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 28
Effective length of database: 9,680,937
Effective search space: 271066236
Effective search space used: 271066236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)