BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0625900 Os01g0625900|AK063574
(366 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316 78 8e-15
AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222 78 8e-15
AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184 69 3e-12
AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160 69 4e-12
AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297 66 4e-11
AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321 65 4e-11
AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316 64 2e-10
AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350 62 6e-10
AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271 60 2e-09
AT5G22240.1 | chr5:7364689-7365279 FORWARD LENGTH=197 49 3e-06
>AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316
Length = 315
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 50/63 (79%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
+AVVK+S +PY DF+ SM+EM+VE+++ V E+E+LL +LSLN+ +HH AI+ AF ++W
Sbjct: 228 VAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSEIW 287
Query: 360 EAV 362
A+
Sbjct: 288 VAL 290
>AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222
Length = 221
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
AVVK+S +PY DFR+SMVEM+VER+I + E+++LL +LSLNS QHH I+ F +++
Sbjct: 156 FAVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIY 215
Query: 360 EAVFG 364
+F
Sbjct: 216 ATLFS 220
>AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184
Length = 183
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 304 KRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEAVF 363
K S +PY DFR SM++M++E I S ++ ELL +LSLN P HH I+ AF ++W+ VF
Sbjct: 92 KDSDDPYLDFRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEIWDGVF 151
>AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160
Length = 159
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 43/61 (70%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
+AV K S +PY DFR SM++M++E +I S E+ ELL +LSLNS HH I+ AF ++W
Sbjct: 68 VAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIW 127
Query: 360 E 360
E
Sbjct: 128 E 128
>AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297
Length = 296
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
A+V S +P DFR SMVEM++E ++ ++E+LL YLSLNS ++H I+ AFE+ W
Sbjct: 226 FAIVLSSVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAFENTW 285
>AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321
Length = 320
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
AV+KRS +P DFR SM+EM+ E I + ++E+LL YL+LN ++H I+ FE +W
Sbjct: 254 FAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQIW 313
>AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316
Length = 315
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
AV+K S +P DFR SMVEM+ E I + +ME+LL YL+LN ++H I+ F VW
Sbjct: 245 FAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQVW 304
Query: 360 EAVFG 364
V
Sbjct: 305 LEVIN 309
>AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350
Length = 349
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 254 SDPADAFRPVVSVAATKKQHNDMKKKEETAIKRQLXXXXXX--XXXXXMAVVKRSSNPYA 311
++ F P S K D+KK ++ A + +L AVVK SS+P
Sbjct: 236 NNKVRVFSPRASEKCRVKAIEDLKKAKQRAREHELLIETADGGMENESFAVVKCSSDPQK 295
Query: 312 DFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDV 358
DFR SM+EM++E I E++ELL YL LN+ ++H I++ F+ V
Sbjct: 296 DFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMIISVFQQV 342
>AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271
Length = 270
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 302 VVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVW 359
VVK S +P DF+ SM EM+ E +I + ++EELL YL LNS ++H I+ F+ +W
Sbjct: 202 VVKASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIW 259
>AT5G22240.1 | chr5:7364689-7365279 FORWARD LENGTH=197
Length = 196
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 300 MAVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLN-SPQHHPAILAAFEDV 358
+A+ K S NP+ D++ SM +M+ ER I + E++ELL +L +N SPQH+ I+ AF DV
Sbjct: 98 VAMAKESINPFEDYKKSMNQMIEERYIETESELKELLRCFLDINPSPQHN-LIVRAFVDV 156
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,175,815
Number of extensions: 191011
Number of successful extensions: 311
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 10
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)