BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0625200 Os01g0625200|AK060383
         (258 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16060.1  | chr3:5447503-5451196 FORWARD LENGTH=685            192   1e-49
AT3G16630.1  | chr3:5662660-5667261 REVERSE LENGTH=795            112   2e-25
AT4G15885.1  | chr4:9016451-9016978 REVERSE LENGTH=114            110   1e-24

>AT3G16060.1 | chr3:5447503-5451196 FORWARD LENGTH=685
          Length = 684

 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/253 (47%), Positives = 156/253 (61%), Gaps = 38/253 (15%)

Query: 1   MISCISPSSGSCEHTLNTLRYADRVKSLSKGSNTKKDLSLAAAPLREXXXXXXXXXXXXX 60
           MISCISPSSGSCEHTLNTLRYADRVKSLSKG+ +KKD+S +   LRE             
Sbjct: 465 MISCISPSSGSCEHTLNTLRYADRVKSLSKGNASKKDVSSSTMNLRESTKIPLSSALPTP 524

Query: 61  XXXEVMNDITERSNFGWTKQQYVKEHQAPTFVDRMQKVKEDTEFSLSNGGYFKEQRTKGS 120
              +  +D+ E     WT++    E  A  +    Q  K++ +   S  G  +E+  K +
Sbjct: 525 SNFD--DDVNEM----WTEEN--DEFDASDYEQDKQMWKKNGKLEPSYNGMAQERIPKPT 576

Query: 121 VPVGIAEVPDTVYQQGRQPTRKARDLTSDNNMRNSIAYPIIRRVVPDEDEHLNELLQEEE 180
           + +                  K+RD+   + M+ S           + D++LN LLQEEE
Sbjct: 577 IQM------------------KSRDMPRPD-MKKS-----------NSDDNLNALLQEEE 606

Query: 181 DLVSAHRKQVEETLDMIKEEMNLLVEADQPGNQLDDYITRLSGILSQKAAGIVDLQARLA 240
           DLV+AHRKQVE+T++++KEEMNLLVEADQPGNQLD YI+RL+ ILSQKAAGI+ LQ RLA
Sbjct: 607 DLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDGYISRLNTILSQKAAGILQLQNRLA 666

Query: 241 QFQRRLNENNVLL 253
            FQ+RL E+NVL+
Sbjct: 667 HFQKRLREHNVLV 679



>AT3G16630.1 | chr3:5662660-5667261 REVERSE LENGTH=795
          Length = 794

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 75/93 (80%)

Query: 166 PDEDEHLNELLQEEEDLVSAHRKQVEETLDMIKEEMNLLVEADQPGNQLDDYITRLSGIL 225
           P  DE+L+ LL+EEE L++AHRK++E+T+++++EEM LL E DQPG+ +++Y+T+LS +L
Sbjct: 701 PSLDENLDALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSMIENYVTQLSFVL 760

Query: 226 SQKAAGIVDLQARLAQFQRRLNENNVLLYAQCP 258
           S+KAAG+V LQARLA+FQ RL E  +L   + P
Sbjct: 761 SRKAAGLVSLQARLARFQHRLKEQEILSRKRVP 793




 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 38/44 (86%)

Query: 1   MISCISPSSGSCEHTLNTLRYADRVKSLSKGSNTKKDLSLAAAP 44
           MISCISP++GSCEHTLNTLRYADRVKSLSK  N+KKD +  + P
Sbjct: 499 MISCISPNAGSCEHTLNTLRYADRVKSLSKSGNSKKDQTANSMP 542



>AT4G15885.1 | chr4:9016451-9016978 REVERSE LENGTH=114
          Length = 113

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 74/93 (79%)

Query: 166 PDEDEHLNELLQEEEDLVSAHRKQVEETLDMIKEEMNLLVEADQPGNQLDDYITRLSGIL 225
           P  DE+++ LL+EEE L++AHRK++E+T++++ EEM LL + D+PG+ +D+Y+T+LS +L
Sbjct: 20  PSLDENIDALLEEEETLITAHRKEIEDTMEIVHEEMKLLAKVDRPGSMIDNYVTQLSFVL 79

Query: 226 SQKAAGIVDLQARLAQFQRRLNENNVLLYAQCP 258
           S+KAAG+V LQARLA+FQ RL E  +L   + P
Sbjct: 80  SRKAAGLVSLQARLARFQHRLKEQEILSRKRVP 112



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,105,620
Number of extensions: 203339
Number of successful extensions: 740
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 4
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)