BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0623200 Os01g0623200|J065123I09
(526 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27970.1 | chr4:13918290-13920122 REVERSE LENGTH=520 456 e-128
AT5G24030.1 | chr5:8118618-8120993 REVERSE LENGTH=636 453 e-128
AT1G12480.1 | chr1:4257427-4259249 REVERSE LENGTH=557 352 2e-97
AT1G62280.1 | chr1:23007309-23008540 REVERSE LENGTH=386 199 4e-51
AT1G62262.1 | chr1:23000318-23001491 REVERSE LENGTH=366 191 1e-48
>AT4G27970.1 | chr4:13918290-13920122 REVERSE LENGTH=520
Length = 519
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/359 (62%), Positives = 273/359 (76%), Gaps = 16/359 (4%)
Query: 162 RLLLNQTRFHSQ--PILHLSKNDETTRRCDSTRDKRFDQFKTFSGRLERQLSTLRGRPAQ 219
R+ + +FHS+ P + + E +R DKR+D F+T SG+LERQ+S LRG+P +
Sbjct: 37 RIGARKMKFHSKSMPRGAMFLDQEASRNF---HDKRYDLFRTMSGKLERQISNLRGKPTE 93
Query: 220 EHMTNGEGAPEPNIAEEETEQVPGADRYFDALEGPELETLRATETTVLPKDEKWPFLLRF 279
+ + +E + ADRYFDAL+GPELETL+ E VLP+D+ WPFLLRF
Sbjct: 94 SSLQD----------HKEITESLTADRYFDALQGPELETLKEKEKIVLPEDKTWPFLLRF 143
Query: 280 PISAFGMCLGVSSQAMLWKTLASAPPTSFLHVSPVVNHVLWWISLALMGFVSFIYLLKVV 339
PI+++GMCLGVSSQA++WKTLA+ FLHV+ V+NHVLWWISL L+ VS YL K +
Sbjct: 144 PITSYGMCLGVSSQAIMWKTLATTEAEKFLHVTQVINHVLWWISLLLLLAVSITYLFKTI 203
Query: 340 FYFEAVRREFYHPIRANFFFAPWIACLFLVQGVPRPV-TEVHHGVWYALMAPIFCLELKI 398
+FEAVRREF HPIR NFFFAP I+ LFL G+P + + + +WY LMAPI LE+KI
Sbjct: 204 LFFEAVRREFRHPIRVNFFFAPLISILFLALGIPHSIISHLPSTLWYFLMAPILFLEMKI 263
Query: 399 YGQWMSGGQRRLSKVANPSNHLSIVGNFVGALLGAKMGLREGPIFYFAVGLAHYMVLFVT 458
YGQWMSGGQRRLSKVANP+NHLSIVGNF GALLGA MGL+EGPIF+FA+GLA+Y+VLFVT
Sbjct: 264 YGQWMSGGQRRLSKVANPTNHLSIVGNFAGALLGASMGLKEGPIFFFAIGLAYYLVLFVT 323
Query: 459 LYQRLPTNVTLPKELHPVFFLFVAAPSVASMAWAKILGEFDYGARIAYFIALFLYMSLV 517
LYQRLPTN TLPKELHPVFFLFVAAP+VASMAW KI FD G+R+AYFI+LFLY SLV
Sbjct: 324 LYQRLPTNETLPKELHPVFFLFVAAPAVASMAWTKISASFDLGSRLAYFISLFLYFSLV 382
>AT5G24030.1 | chr5:8118618-8120993 REVERSE LENGTH=636
Length = 635
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/330 (66%), Positives = 263/330 (79%), Gaps = 8/330 (2%)
Query: 188 CDSTRDKRFDQFKTFSGRLERQLSTLRGRPAQEHMTNGEGAPEPNIAEEETEQVPGADRY 247
+ +D R++ FKT+SG+LERQ + +PA E N E +P DRY
Sbjct: 174 ANKLKDNRYNSFKTWSGKLERQFTR---KPAS---VEPEAPNRNNQNLNTNEAMP-VDRY 226
Query: 248 FDALEGPELETLRATETTVLPKDEKWPFLLRFPISAFGMCLGVSSQAMLWKTLASAPPTS 307
+DALEGPELETLR E VLP D+KWPFLLR+PIS FGMCLGVSSQA++WKTLA+A PT
Sbjct: 227 YDALEGPELETLRPQEEIVLPNDKKWPFLLRYPISTFGMCLGVSSQAIMWKTLATAEPTK 286
Query: 308 FLHVSPVVNHVLWWISLALMGFVSFIYLLKVVFYFEAVRREFYHPIRANFFFAPWIACLF 367
FLHV +N LW+IS+AL+ ++ IYLLK++ +FEAVRRE+YHPIR NFFFAP+I+ LF
Sbjct: 287 FLHVPLWINQGLWFISVALILTIATIYLLKIILFFEAVRREYYHPIRINFFFAPFISLLF 346
Query: 368 LVQGVP-RPVTEVHHGVWYALMAPIFCLELKIYGQWMSGGQRRLSKVANPSNHLSIVGNF 426
L GVP +T++ H +WY LM P CLELKIYGQWMSGGQRRLS+VANP+NHLS+VGNF
Sbjct: 347 LALGVPPSIITDLPHFLWYLLMFPFICLELKIYGQWMSGGQRRLSRVANPTNHLSVVGNF 406
Query: 427 VGALLGAKMGLREGPIFYFAVGLAHYMVLFVTLYQRLPTNVTLPKELHPVFFLFVAAPSV 486
VGALLGA MGLREGPIF++AVG+AHY+VLFVTLYQRLPTN TLPK+LHPVFFLFVAAPSV
Sbjct: 407 VGALLGASMGLREGPIFFYAVGMAHYLVLFVTLYQRLPTNETLPKDLHPVFFLFVAAPSV 466
Query: 487 ASMAWAKILGEFDYGARIAYFIALFLYMSL 516
ASMAWAK+ G FDYG+++ YFIA+FLY SL
Sbjct: 467 ASMAWAKVTGSFDYGSKVCYFIAIFLYFSL 496
>AT1G12480.1 | chr1:4257427-4259249 REVERSE LENGTH=557
Length = 556
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/330 (53%), Positives = 233/330 (70%), Gaps = 5/330 (1%)
Query: 192 RDKRFDQFKTFSGRLERQLSTLRGRPAQEHMTNGEGAPEPNIAEEETEQVPGADRYFDAL 251
R F F+T S L +Q S L + + N + ++ + A RYF AL
Sbjct: 102 RKTDFSMFRTKST-LSKQKSLLPSIIRERDIENSLRTEDGETKDDSINENVSAGRYFAAL 160
Query: 252 EGPELETLRATETTVLPKDEKWPFLLRFPISAFGMCLGVSSQAMLWKTLASAPPTSFLHV 311
GPEL+ ++ E +LPK+E+WPFLLRFPI FG+CLG+SSQA+LW LA +P T+FLH+
Sbjct: 161 RGPELDEVKDNEDILLPKEEQWPFLLRFPIGCFGICLGLSSQAVLWLALAKSPATNFLHI 220
Query: 312 SPVVNHVLWWISLALMGFVSFIYLLKVVFYFEAVRREFYHPIRANFFFAPWIACLFLVQG 371
+P++N V+W SL ++ VSF Y+LK +FYFEAV+RE++HP+R NFFFAPW+ C+FL
Sbjct: 221 TPLINLVVWLFSLVVLVSVSFTYILKCIFYFEAVKREYFHPVRVNFFFAPWVVCMFLAIS 280
Query: 372 VPRPVTE----VHHGVWYALMAPIFCLELKIYGQWMSGGQRRLSKVANPSNHLSIVGNFV 427
VP + +H +W M P F LELKIYGQW+SGG+RRL KVANPS+HLS+VGNFV
Sbjct: 281 VPPMFSPNRKYLHPAIWCVFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFV 340
Query: 428 GALLGAKMGLREGPIFYFAVGLAHYMVLFVTLYQRLPTNVTLPKELHPVFFLFVAAPSVA 487
GA+L +K+G E F +AVG AHY+V+FVTLYQRLPT+ LPKELHPV+ +F+AAPS A
Sbjct: 341 GAILASKVGWDEVAKFLWAVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAA 400
Query: 488 SMAWAKILGEFDYGARIAYFIALFLYMSLV 517
S+AW I G+FD +R +FIALFLY+SLV
Sbjct: 401 SIAWNTIYGQFDGCSRTCFFIALFLYISLV 430
>AT1G62280.1 | chr1:23007309-23008540 REVERSE LENGTH=386
Length = 385
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 157/240 (65%), Gaps = 6/240 (2%)
Query: 284 FGMCLGVSSQAMLWKTLAS--APPTSFLH--VSPVVNHVLWWISLALMGFVSFIYLLKVV 339
F + L + SQA+LWK + + +P S +H + + H+LW+++L + F+Y LK +
Sbjct: 46 FRISLSLCSQALLWKIMIAPESPSMSHMHSKLPSMAFHLLWYLALVTQVSLCFLYALKCI 105
Query: 340 FYFEAVRREFYHPIRANFFFAPWIACLFLVQGVP--RPVTEVHHGVWYALMAPIFCLELK 397
F+F+ V+ EF H I N+ +AP I+ L ++Q P P + ++ +++ P+ L++K
Sbjct: 106 FFFDKVKEEFLHYIGVNYLYAPSISWLLMLQSAPMMEPNSVLYQTLFWIFAVPVLTLDIK 165
Query: 398 IYGQWMSGGQRRLSKVANPSNHLSIVGNFVGALLGAKMGLREGPIFYFAVGLAHYMVLFV 457
+YGQW + +R LS +ANP++ +S++ N V A A+MG E + F++G+ HY+V+FV
Sbjct: 166 LYGQWFTTEKRFLSMLANPASQVSVIANLVAARGAAEMGWNECALCMFSLGMVHYLVIFV 225
Query: 458 TLYQRLPTNVTLPKELHPVFFLFVAAPSVASMAWAKILGEFDYGARIAYFIALFLYMSLV 517
TLYQRLP P +L P+FFLFVAAP++AS+AW I G FD A++ +F++LF++MSLV
Sbjct: 226 TLYQRLPGGNNFPAKLRPIFFLFVAAPAMASLAWNSICGTFDAVAKMLFFLSLFIFMSLV 285
>AT1G62262.1 | chr1:23000318-23001491 REVERSE LENGTH=366
Length = 365
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 150/238 (63%), Gaps = 10/238 (4%)
Query: 284 FGMCLGVSSQAMLWKTLASAPPTSFLH--VSPVVNHVLWWISLALMGFVSFIYLLKVVFY 341
F + L + SQA+LWK + LH + + ++LW+++LA + F+Y K +F
Sbjct: 46 FRISLSLCSQALLWKIMVH------LHSELPSMAYYLLWYLALATQVSLCFLYAFKCIFL 99
Query: 342 FEAVRREFYHPIRANFFFAPWIACLFLVQGVP--RPVTEVHHGVWYALMAPIFCLELKIY 399
F+ V+ EF H I N+ +AP I+CL L+Q P P + ++ +++ P+ L+ K+Y
Sbjct: 100 FDMVKEEFSHYIGVNYLYAPSISCLLLLQSAPMIEPHSVLYQTLFWIFAVPVLTLDTKLY 159
Query: 400 GQWMSGGQRRLSKVANPSNHLSIVGNFVGALLGAKMGLREGPIFYFAVGLAHYMVLFVTL 459
GQW + +R LS +ANP++ +S++ N V A A+MG +E + F++G+ HY+V+FVTL
Sbjct: 160 GQWFTTEKRFLSIMANPASQVSVIANLVAARGAAEMGWKECALCLFSLGMVHYLVIFVTL 219
Query: 460 YQRLPTNVTLPKELHPVFFLFVAAPSVASMAWAKILGEFDYGARIAYFIALFLYMSLV 517
YQRLP P L PVFFLF AAP+ AS+AW I G FD A++ +F++LF+++SLV
Sbjct: 220 YQRLPGGNNFPTTLRPVFFLFFAAPATASLAWNSICGNFDTIAKMLFFLSLFIFISLV 277
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,338,329
Number of extensions: 477429
Number of successful extensions: 992
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 982
Number of HSP's successfully gapped: 5
Length of query: 526
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 423
Effective length of database: 8,282,721
Effective search space: 3503590983
Effective search space used: 3503590983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)