BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0612900 Os01g0612900|J075175B03
(163 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45910.1 | chr5:18620420-18622264 REVERSE LENGTH=373 66 7e-12
AT2G27360.1 | chr2:11706233-11707905 FORWARD LENGTH=395 62 1e-10
AT1G28590.1 | chr1:10047509-10049300 REVERSE LENGTH=404 59 9e-10
AT1G28570.1 | chr1:10041838-10044112 REVERSE LENGTH=390 57 4e-09
AT1G28640.1 | chr1:10067563-10069109 REVERSE LENGTH=390 56 8e-09
AT1G28650.1 | chr1:10069547-10071082 REVERSE LENGTH=386 55 2e-08
AT1G28580.1 | chr1:10044603-10046379 REVERSE LENGTH=391 54 2e-08
AT1G31550.2 | chr1:11295635-11297284 REVERSE LENGTH=395 54 3e-08
AT1G28670.1 | chr1:10074669-10076250 REVERSE LENGTH=385 51 3e-07
AT1G28610.2 | chr1:10053877-10055665 REVERSE LENGTH=384 50 7e-07
AT1G28660.1 | chr1:10071856-10073371 REVERSE LENGTH=384 49 1e-06
AT4G01130.1 | chr4:485868-488007 FORWARD LENGTH=383 49 1e-06
AT3G48460.1 | chr3:17949496-17951082 FORWARD LENGTH=382 49 1e-06
AT1G28600.1 | chr1:10051228-10053073 REVERSE LENGTH=394 47 4e-06
AT3G09930.1 | chr3:3053356-3055203 FORWARD LENGTH=355 47 6e-06
>AT5G45910.1 | chr5:18620420-18622264 REVERSE LENGTH=373
Length = 372
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 40 FERIFSFGDSLTDTGNFLLSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
+E IF+FGDSL+DTGNFLLS D P+ R LPYGQTFF R +GR SDGR
Sbjct: 28 YESIFNFGDSLSDTGNFLLSGDVDSPNIGR-LPYGQTFFNRSTGRCSDGR 76
>AT2G27360.1 | chr2:11706233-11707905 FORWARD LENGTH=395
Length = 394
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F+ I SFGDS+TDTGN L LS P D P+ A PYG+TFF PSGR+SDGR
Sbjct: 31 FKSIISFGDSITDTGNLLGLSSPNDLPESAFP-PYGETFFHHPSGRFSDGR 80
>AT1G28590.1 | chr1:10047509-10049300 REVERSE LENGTH=404
Length = 403
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F+ I SFGDS+ DTGN L LS P D P A PYG+TFF P+GRYSDGR
Sbjct: 34 FKSIISFGDSIADTGNLLGLSDPNDLPASAFP-PYGETFFHHPTGRYSDGR 83
>AT1G28570.1 | chr1:10041838-10044112 REVERSE LENGTH=390
Length = 389
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F+ I SFGDS+ DTGN L LS P + P A LPYG+TFF P+GR+S+GR
Sbjct: 32 FKSIISFGDSIADTGNLLALSDPTNLPKVAF-LPYGETFFHHPTGRFSNGR 81
>AT1G28640.1 | chr1:10067563-10069109 REVERSE LENGTH=390
Length = 389
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F+ I SFGDS+ DTGN+L LS P A LPYG++FF PSGRYSDGR
Sbjct: 33 FKSIISFGDSIADTGNYLHLSDVNHLPQSAF-LPYGESFFHPPSGRYSDGR 82
>AT1G28650.1 | chr1:10069547-10071082 REVERSE LENGTH=386
Length = 385
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
++ I SFGDS+ DTGN++ LS + P A LPYG++FF PSGRYSDGR
Sbjct: 35 YKSIISFGDSIADTGNYVHLSNVNNLPQAAF-LPYGESFFHPPSGRYSDGR 84
>AT1G28580.1 | chr1:10044603-10046379 REVERSE LENGTH=391
Length = 390
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F+ I SFGDS+ DTGN L LS P+D P A PYG+ FF P+GR+S+GR
Sbjct: 35 FKSIISFGDSIADTGNLLGLSDPKDLPHMAFP-PYGENFFHHPTGRFSNGR 84
>AT1G31550.2 | chr1:11295635-11297284 REVERSE LENGTH=395
Length = 394
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
FE I SFGDS+ DTGN L LS + P A PYG+TFF P+GR+SDGR
Sbjct: 34 FESIISFGDSIADTGNLLGLSDHNNLPMSAFP-PYGETFFHHPTGRFSDGR 83
>AT1G28670.1 | chr1:10074669-10076250 REVERSE LENGTH=385
Length = 384
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F+ I SFGDS+ DTGN+L LS P A LPYG++FF PSGR S+GR
Sbjct: 33 FKSIISFGDSIADTGNYLHLSDVNHLPQSAF-LPYGESFFHPPSGRASNGR 82
>AT1G28610.2 | chr1:10053877-10055665 REVERSE LENGTH=384
Length = 383
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
E I SFGDS+TDTGN + LS P A LPYG+TFF P+GR +GR
Sbjct: 29 LESIISFGDSITDTGNLVGLSDRNHLPVTAF-LPYGETFFHHPTGRSCNGR 78
>AT1G28660.1 | chr1:10071856-10073371 REVERSE LENGTH=384
Length = 383
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F I SFGDS+ DTGN L LS P A PYG++FF PSGR SDGR
Sbjct: 33 FTSIISFGDSIADTGNILHLSDVNHLPQTAF-FPYGESFFHPPSGRASDGR 82
>AT4G01130.1 | chr4:485868-488007 FORWARD LENGTH=383
Length = 382
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 6/50 (12%)
Query: 40 FERIFSFGDSLTDTGNFLLSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
FE IF+FGDS +DTG F + P A+S P+G T+F +P+GR SDGR
Sbjct: 32 FEAIFNFGDSNSDTGGFWAAFP------AQSGPWGMTYFKKPAGRASDGR 75
>AT3G48460.1 | chr3:17949496-17951082 FORWARD LENGTH=382
Length = 381
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 40 FERIFSFGDSLTDTGNFLLSVPEDFPDPA-----RSLPYGQTFFGRPSGRYSDGR 89
F +I++FGDS TDTGN PA S PYG TFF RP+ RYSDGR
Sbjct: 36 FNKIYAFGDSFTDTGN-----SRSGEGPAGFGHLSSPPYGMTFFRRPTNRYSDGR 85
>AT1G28600.1 | chr1:10051228-10053073 REVERSE LENGTH=394
Length = 393
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 40 FERIFSFGDSLTDTGNFL-LSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
F+ I SFGDS+ DTGN + LS P A PYG+TFF P+GR DGR
Sbjct: 29 FKSIISFGDSIADTGNLVGLSDRNQLPVTAFP-PYGETFFHHPTGRSCDGR 78
>AT3G09930.1 | chr3:3053356-3055203 FORWARD LENGTH=355
Length = 354
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 41 ERIFSFGDSLTDTGNFLLSVPEDFPDPARSLPYGQTFFGRPSGRYSDGR 89
R+F FGDS DTGN S+ + + +PYG TF +PSGR+SDGR
Sbjct: 38 NRLFVFGDSYADTGNIRKSLSDSW-----KIPYGITFPQKPSGRFSDGR 81
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.143 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,998,353
Number of extensions: 105979
Number of successful extensions: 316
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 19
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)