BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0610700 Os01g0610700|AK068000
         (309 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11020.1  | chr1:3676968-3678350 FORWARD LENGTH=322            363   e-101
AT2G22120.2  | chr2:9394026-9396979 FORWARD LENGTH=364            177   8e-45
AT1G50440.1  | chr1:18686099-18687646 FORWARD LENGTH=251          144   4e-35

>AT1G11020.1 | chr1:3676968-3678350 FORWARD LENGTH=322
          Length = 321

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/263 (70%), Positives = 210/263 (79%), Gaps = 4/263 (1%)

Query: 51  SAACCRICLESETEP-GDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQF 109
           SA CCRICLE ++E  GDELISPCMCKGTQQFVHR CLDHWRSVKEG AFSHCTTCKAQF
Sbjct: 59  SAPCCRICLEDDSELLGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQF 118

Query: 110 HLRVECLEDNLC--RKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSD 167
           HLRVE  EDN    RK  FRLFVARDV LVFLAVQTVIA + G AY++DKDG+FRNSF+D
Sbjct: 119 HLRVEPFEDNNSWRRKAKFRLFVARDVLLVFLAVQTVIAVMAGFAYMMDKDGEFRNSFND 178

Query: 168 GWEHILSNHPVPFYYCXXXXXXXXXXXXXXXXXQCSSFNTNDPCLAGCRNCCYGWGILD- 226
            W+ ILS HP+PFYYC                  CS+ N NDP +AGC+NCCYGWG+LD 
Sbjct: 179 DWDRILSKHPIPFYYCIGVISFFVLTGFLGIILHCSALNGNDPRMAGCQNCCYGWGVLDC 238

Query: 227 FPASIEACLALAVIFVIVFAILGVAYGFFAATVAVQRILQRHYHILTKRELTKEYVVEDL 286
           FPAS+EAC AL V+FV++FAILG+AYGF AAT+A+QRI QRHYHILTKRELTKEY+VEDL
Sbjct: 239 FPASMEACFALVVVFVVIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDL 298

Query: 287 RGCYTPPKMDPEQEQRLRTLQLM 309
            G YTPPK+D E E RL+ L+L+
Sbjct: 299 HGSYTPPKLDAEHEGRLKMLKLL 321



>AT2G22120.2 | chr2:9394026-9396979 FORWARD LENGTH=364
          Length = 363

 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 150/300 (50%), Gaps = 55/300 (18%)

Query: 55  CRICLESETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVE 114
           CRICLE++   G + I+PC CKGT ++VHR CLDHWR++KEG AF+HCTTCKA ++LRV 
Sbjct: 35  CRICLETD---GRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYYLRVH 91

Query: 115 CLEDNLCRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGW-EHIL 173
              D   R + FR FV RD+  +FLAVQ VIAA+  M Y +D       S+   W  HI 
Sbjct: 92  SAGDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFID-------SYQQSWLRHIW 144

Query: 174 S-NHPVPFYYCXXXXXXXXXXXXXXXXXQCSSFNTND----PCLAGCRNCCYGWGILD-- 226
             +  V FYY                   C      +    PC   C  CC      D  
Sbjct: 145 GFDSEVTFYYMCGALLFFALLGLSGCVITCYDRRVRNDLAQPCRELCLCCCQPGICTDCH 204

Query: 227 FPASI----------------------------EACLAL----AVIFVIVFAILGVAYGF 254
            P +I                            EA L L    A++ + +F ++G+ Y  
Sbjct: 205 LPGTICMWADCTACTEGCASAVSECGGCLGGAGEAGLPLLFITALVILGLFTVIGIFYSV 264

Query: 255 FAATVAVQRILQRHYHILTKRELTKEYVVEDLRG-----CYTPPKMDPEQEQRLRTLQLM 309
             AT+  QRI QRHYHIL KR LTKEYVVED+ G      ++PP +  E  Q+L+TL L+
Sbjct: 265 LVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWSPPALPTEHVQQLKTLGLL 324



>AT1G50440.1 | chr1:18686099-18687646 FORWARD LENGTH=251
          Length = 250

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 124/254 (48%), Gaps = 68/254 (26%)

Query: 55  CRICLESETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVE 114
           CRICL+     G++LI+PC CKGTQ+ VHR CLD+WRS KEG AFSHCT C+A F LR  
Sbjct: 64  CRICLDV---GGEDLIAPCNCKGTQKHVHRSCLDNWRSTKEGFAFSHCTECRAFFKLRAN 120

Query: 115 CLEDNLCRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWEHILS 174
              D    ++ F+L VARD   +F++VQ ++A +G + Y    + + R  F  G+E    
Sbjct: 121 VPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVYKFYGE-ELREMF--GYE---- 173

Query: 175 NHPVPFYYCXXXXXXXXXXXXXXXXXQCSSFNTNDPCLAGCRNCCYGWGILDFPASIEAC 234
            HP  FY                                                     
Sbjct: 174 EHPYGFY---------------------------------------------------TL 182

Query: 235 LALAVIFVIVFAILGVAYGFFAATVAVQRILQRHYHILTKRELTKEYVVEDLRGCYTPPK 294
             LA++ V      G+ YGFF A +  Q+I +RHYH+L K+ELTKEY+VED R C   P+
Sbjct: 183 AVLAIVLV------GLLYGFFIAIICGQKINERHYHVLAKQELTKEYIVED-RDCKNVPE 235

Query: 295 MDPEQEQRLRTLQL 308
           +D      L+ L L
Sbjct: 236 LDQSHVMELKMLGL 249



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,964,523
Number of extensions: 204633
Number of successful extensions: 719
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 4
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)