BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0610100 Os01g0610100|AK059810
(176 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25610.1 | chr2:10901585-10902494 REVERSE LENGTH=179 273 5e-74
AT4G32530.2 | chr4:15693399-15694958 REVERSE LENGTH=211 255 9e-69
AT4G34720.1 | chr4:16568223-16569165 REVERSE LENGTH=165 72 2e-13
AT4G38920.1 | chr4:18147330-18148853 FORWARD LENGTH=165 72 2e-13
AT2G16510.1 | chr2:7160007-7160811 REVERSE LENGTH=165 72 2e-13
AT1G19910.1 | chr1:6913317-6914322 FORWARD LENGTH=166 72 2e-13
AT1G75630.2 | chr1:28400662-28402032 FORWARD LENGTH=201 55 2e-08
>AT2G25610.1 | chr2:10901585-10902494 REVERSE LENGTH=179
Length = 178
Score = 273 bits (697), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 140/172 (81%), Positives = 153/172 (88%)
Query: 4 DSSSWARALVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLI 63
+SSW ALV+ISPYTFSAIGIA+SIGVSVLGAAWGI+ITGSSLIGAAI+APRITSKNLI
Sbjct: 7 HASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLI 66
Query: 64 SVIFCEXXXXXXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVC 123
SVIFCE LQTKLESVP++ ++ ESLRAGYAIFASG+IVGFANLVCG+C
Sbjct: 67 SVIFCEAVAIYGVIVAIILQTKLESVPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLC 126
Query: 124 VGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQATWPAK 175
VGIIGSSCALSDAQNS+LFVKILVIEIFGSALGLFGVIVGIIMS+QATWP K
Sbjct: 127 VGIIGSSCALSDAQNSTLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTK 178
>AT4G32530.2 | chr4:15693399-15694958 REVERSE LENGTH=211
Length = 210
Score = 255 bits (651), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 140/202 (69%), Positives = 153/202 (75%), Gaps = 30/202 (14%)
Query: 4 DSSSWARALVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLI 63
+SSW ALV+ISPYTFSAIGIA+SIGVSVLGAAWGI+ITGSSLIGAAI+APRITSKNLI
Sbjct: 9 HASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLI 68
Query: 64 SVIFCEXXXXXXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCG-- 121
SVIFCE LQTKLESVP++ ++ ESLRAGYAIFASG+IVGFANLVCG
Sbjct: 69 SVIFCEAVAIYGVIVAIILQTKLESVPSSKMYDAESLRAGYAIFASGIIVGFANLVCGSV 128
Query: 122 ----------------------------VCVGIIGSSCALSDAQNSSLFVKILVIEIFGS 153
+CVGIIGSSCALSDAQNS+LFVKILVIEIFGS
Sbjct: 129 STLFSFLTVLVFGFHCQICNRGPHFSCRLCVGIIGSSCALSDAQNSTLFVKILVIEIFGS 188
Query: 154 ALGLFGVIVGIIMSSQATWPAK 175
ALGLFGVIVGIIMS+QATWP K
Sbjct: 189 ALGLFGVIVGIIMSAQATWPTK 210
>AT4G34720.1 | chr4:16568223-16569165 REVERSE LENGTH=165
Length = 164
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A ++ L GYA +SGL G A L G+ +GI+G +
Sbjct: 67 YGLIIAVIISTGIN--PKAKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 158
>AT4G38920.1 | chr4:18147330-18148853 FORWARD LENGTH=165
Length = 164
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A ++ L GYA +SGL G A L G+ +GI+G +
Sbjct: 67 YGLIIAVIISTGIN--PKAKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 158
>AT2G16510.1 | chr2:7160007-7160811 REVERSE LENGTH=165
Length = 164
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A ++ L GYA +SGL G A L G+ +GI+G +
Sbjct: 67 YGLIIAVIISTGIN--PKAKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 158
>AT1G19910.1 | chr1:6913317-6914322 FORWARD LENGTH=166
Length = 165
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A ++ L GYA +SGL G A L G+ +GI+G +
Sbjct: 68 YGLIIAVIISTGIN--PKAKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 123 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159
>AT1G75630.2 | chr1:28400662-28402032 FORWARD LENGTH=201
Length = 200
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 10 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 68
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A ++ L GYA +SGL G A L G+ +GI+G +
Sbjct: 69 YGLIIAVIISTGIN--PKAKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 123
Query: 134 ----------------------------------SDAQNSSLFVKILVIEIFGSALGLFG 159
++AQ LFV +++I IF AL L+G
Sbjct: 124 VVDCNPDSKIKIYSFTTSFLSNLSQKELFIDLLSANAQQPKLFVGMILILIFAEALALYG 183
Query: 160 VIVGIIMSSQA 170
+IVGII+SS+A
Sbjct: 184 LIVGIILSSRA 194
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,054,178
Number of extensions: 101861
Number of successful extensions: 308
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 7
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)