BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0605600 Os01g0605600|J065022D17
(429 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48950.1 | chr1:18107063-18110108 FORWARD LENGTH=595 122 4e-28
AT1G17210.1 | chr1:5880502-5884657 REVERSE LENGTH=959 48 8e-06
>AT1G48950.1 | chr1:18107063-18110108 FORWARD LENGTH=595
Length = 594
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Query: 1 QALKIISLCGWEPRLLPYAVDCGTKSHSDANSSSTLTQPGLINNSMEDRVVVYA-----P 55
QA K+ISLCGWEPR LPY VDC K A + T+ L+ + ++ + P
Sbjct: 259 QAQKLISLCGWEPRALPYIVDCKDKLSETARGTETI---DLLPETATRELLSISESTPIP 315
Query: 56 NEVDGST---VIADARQAYQHYDPLSVVLDCQFCGACVALWPFSLVERPLQLFKLISDSS 112
N + G+ + D + DP SVVLDC+ CGACV LW FS V RPL+L ++ D
Sbjct: 316 NGISGNNENPTLPDTLNS----DPSSVVLDCKLCGACVGLWVFSTVPRPLELCRVTGD-- 369
Query: 113 RQDEQTEGHAGRVSGAGPSKTANIGFNFTIAGGPPPTRQNFRPRVSLPVVSRHLKADLSS 172
TE + + G + FTIAGGPP T+QNF+ +SLP++ R+L++ +S
Sbjct: 370 -----TEINIEKHPKGGTLQHQPSSLKFTIAGGPPATKQNFKATISLPIIGRNLRSRFAS 424
Query: 173 HGH 175
+
Sbjct: 425 YSR 427
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 343 DKLNEFDPMKQHRTFCPWICPDGGETLPGWRLTLPALLSQDKRIDEDSQVEPQISLLSEE 402
+K EFDP+KQHR FCPWI G PGWR TL AL +R Q P S L +
Sbjct: 513 NKQMEFDPIKQHRHFCPWIWSTGRRG-PGWRQTLSAL----QRHKGSCQTPPSSSSLFKV 567
Query: 403 DDPVTSVRKLFMTPPSKKLRIH 424
DDP+TSVR LF +P KK +++
Sbjct: 568 DDPLTSVRNLFKSPSPKKRKLN 589
>AT1G17210.1 | chr1:5880502-5884657 REVERSE LENGTH=959
Length = 958
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 1 QALKIISLCGWEPRLLPYAVDCGTKSHSDANSSSTLTQPGLINNSMEDRVVVYAPNEVDG 60
+A K+ISLCGWEPR LP DC + HS A S+ G N + R+ P+
Sbjct: 260 RAQKLISLCGWEPRWLPNIQDC--EEHS-AQSARNGCPSGPARN--QSRLQDPGPSRKQF 314
Query: 61 STVIADARQAYQHYDPLS---------VVLDCQFCGACVALWPFSLVERPL 102
S A +R+A +Y+ L +LDC CG V + F RP+
Sbjct: 315 S---ASSRKASGNYEVLGPEYKSESRLPLLDCSLCGVTVRICDFMTTSRPV 362
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,130,113
Number of extensions: 445736
Number of successful extensions: 1164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1160
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 328
Effective length of database: 8,337,553
Effective search space: 2734717384
Effective search space used: 2734717384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)