BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0605400 Os01g0605400|Os01g0605400
         (688 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16020.1  | chr5:5229692-5232241 FORWARD LENGTH=642            333   2e-91

>AT5G16020.1 | chr5:5229692-5232241 FORWARD LENGTH=642
          Length = 641

 Score =  333 bits (854), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/545 (35%), Positives = 281/545 (51%), Gaps = 24/545 (4%)

Query: 52  LGSPLIGHDGRLIACSEKKSLVAFERNGSIAWMVTLGHTCKEGISPVAERDEIYLVAEDN 111
           L   LIG DGR+ ACS+     +FE NGSIAW V +   C    +PV       L+  +N
Sbjct: 43  LSKILIGDDGRVYACSDN-DFFSFESNGSIAWSVHMNFKCNTDFAPVYSGFNQMLLLAEN 101

Query: 112 KVIKITPKKLHTADPPSEVFFSYNATPGRXXXXXXXXXXXXXXXXFLTIRNRGLFAFSLH 171
           +++++   +  T   P E+FF     PG                 ++T++N GL+A+++ 
Sbjct: 102 RILRVIFPRNGTKSEP-ELFFD----PGETILGFAVSVSSSSV--YITVKNHGLYAYNMF 154

Query: 172 AELQWSAGP-VADLVSRLGCKTNISGCYFNSPPVVDRCEGTLYVSNTEGQLYSLYIKSGQ 230
            +  W A P +     RLGC+ +   C FNS PV+D CEG++Y+SN EG+LYSL ++   
Sbjct: 155 RQQLWIAEPKIERFGYRLGCRKDFDNCTFNSRPVIDSCEGSIYISNNEGELYSLSLRGTY 214

Query: 231 YRWIQDLGSLDKVMNIVPGNNGLLYIVLPRKSIVMGLDVLTGNISWQQTIGPLSNEKILP 290
           Y+WIQD   +D+   + PGNNGL+Y+V P KS+V  LD  +G+I WQ+TIGPL+      
Sbjct: 215 YQWIQDFSLVDRFFTVTPGNNGLVYVVFPIKSLVFALDSFSGDILWQKTIGPLAETSASD 274

Query: 291 PV-DSNGWISVGSLDGTLYSISPNGDIRRFPERTTPGSVIHASPVLDCSGFSVYVSQTIM 349
           PV DSN W S+GSLDGTLYS S  GD+ + P+     SVI   P+LDCSG++VYVSQT  
Sbjct: 275 PVIDSNSWASIGSLDGTLYSFSRTGDLYKIPKNAETDSVIQIEPLLDCSGYAVYVSQTKF 334

Query: 350 EAKSNQTIGDXXXXXXXXXXXXXXXXXXPANGTIHWTGNYPGELSDFLSSTDLNDFALDE 409
           E   ++ I D                  P   +I+W+ +Y  ++   L   DL  F LDE
Sbjct: 335 EGMIDRVIEDYTYVSAKKPETAVFSLVVPETRSIYWSQSYSDQIPGLLLDEDLQHFVLDE 394

Query: 410 TIVLRLFSAASK-NWQHYAVLHEKYVSFLRTVKPN-----FGNDQGDRNIRLXXXXXXXX 463
            I L   +A+S  N       HEK  S     +P       GN++    I          
Sbjct: 395 RIALAFVAASSSGNPFRCRSKHEKLSSSCSFAEPEHLDIYIGNERA--IIWFLLFEFVIM 452

Query: 464 XXXXXXNCFCCIFWRXXXXXXXXXXXXXEKRHSLHTKRKILGKRISELEQKTVHDASSNE 523
                   FC IFW+             +KR  LH K + + K I+ L+ ++  + S   
Sbjct: 453 VLFAALVRFCFIFWKKKKLQDRPFSTFLDKRRLLHRKSREIDKTITRLQNESTANES--- 509

Query: 524 ALGQLGETVNAKECIERKLCSSYSLGRDMLGLK---HDSILPLNSTKYKSHSFRNSREES 580
           A+ ++G+ +  +E ++RKL S+YSLGRD+   K    D +LPL     +S S+RN   ES
Sbjct: 510 AVDKIGDLIQKRENVKRKLSSTYSLGRDIDESKSKLKDYVLPLYGGSSRSFSYRNRENES 569

Query: 581 ITVFN 585
           IT+F 
Sbjct: 570 ITIFQ 574



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,001,935
Number of extensions: 554281
Number of successful extensions: 1200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 583
Effective length of database: 8,227,889
Effective search space: 4796859287
Effective search space used: 4796859287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)