BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0602800 Os01g0602800|015-011-A08
         (32 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13690.1  | chr3:4486920-4490011 FORWARD LENGTH=754             61   1e-10
AT1G55200.1  | chr1:20589309-20592049 REVERSE LENGTH=677           58   8e-10
AT5G56790.1  | chr5:22968610-22971391 FORWARD LENGTH=670           55   6e-09
AT3G24550.1  | chr3:8960411-8963303 FORWARD LENGTH=653             47   2e-06
AT1G10620.1  | chr1:3509001-3511975 REVERSE LENGTH=719             47   2e-06

>AT3G13690.1 | chr3:4486920-4490011 FORWARD LENGTH=754
          Length = 753

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 28/30 (93%)

Query: 3   GRNKETLQWSARQKIAVGAARGLRYLHEEC 32
           GR KETL+W ARQKIAVGAARGLRYLHEEC
Sbjct: 498 GRQKETLEWPARQKIAVGAARGLRYLHEEC 527



>AT1G55200.1 | chr1:20589309-20592049 REVERSE LENGTH=677
          Length = 676

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/30 (86%), Positives = 28/30 (93%)

Query: 3   GRNKETLQWSARQKIAVGAARGLRYLHEEC 32
           GR+K+TL W ARQKIAVGAARGLRYLHEEC
Sbjct: 466 GRHKDTLGWPARQKIAVGAARGLRYLHEEC 495



>AT5G56790.1 | chr5:22968610-22971391 FORWARD LENGTH=670
          Length = 669

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/30 (83%), Positives = 26/30 (86%)

Query: 3   GRNKETLQWSARQKIAVGAARGLRYLHEEC 32
           G  +E L WSARQKIAVGAARGLRYLHEEC
Sbjct: 477 GMGREPLGWSARQKIAVGAARGLRYLHEEC 506



>AT3G24550.1 | chr3:8960411-8963303 FORWARD LENGTH=653
          Length = 652

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 26/32 (81%)

Query: 1   ISGRNKETLQWSARQKIAVGAARGLRYLHEEC 32
           + G+ + T++WS R KIA+G+A+GL YLHE+C
Sbjct: 365 LHGKGRPTMEWSTRLKIALGSAKGLSYLHEDC 396



>AT1G10620.1 | chr1:3509001-3511975 REVERSE LENGTH=719
          Length = 718

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 1   ISGRNKETLQWSARQKIAVGAARGLRYLHEEC 32
           + G+N   L+WS R +IA+GAA+GL YLHE+C
Sbjct: 455 LHGKNLPVLEWSRRVRIAIGAAKGLAYLHEDC 486



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 636,434
Number of extensions: 10350
Number of successful extensions: 629
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 5
Length of query: 32
Length of database: 11,106,569
Length adjustment: 7
Effective length of query: 25
Effective length of database: 10,914,657
Effective search space: 272866425
Effective search space used: 272866425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)