BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0599900 Os01g0599900|Os01g0599900
(537 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71360.1 | chr1:26892214-26894166 REVERSE LENGTH=597 230 2e-60
AT1G22882.1 | chr1:8099150-8101220 FORWARD LENGTH=661 228 9e-60
AT4G23950.2 | chr4:12442297-12444330 FORWARD LENGTH=563 214 1e-55
>AT1G71360.1 | chr1:26892214-26894166 REVERSE LENGTH=597
Length = 596
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/186 (59%), Positives = 133/186 (71%), Gaps = 10/186 (5%)
Query: 116 FRSRILQGKAENGR---VPDGATPAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAANI 172
F+SR A N R + T HR+EP G EYNYAAASKGAKVL+ N+EAKGA++I
Sbjct: 174 FKSR-----ASNSRDKSLSGQVTGVIHRMEPGGKEYNYAAASKGAKVLSSNKEAKGASSI 228
Query: 173 LGGDKDRYLRNPCSADDKFVDVELSEETLVRTIGLANLEHYSSNFRDFELYGSPSYPAPA 232
+ DKD+YLRNPCS + KFV +ELSEETLV TI +AN EHYSSN +DFE+ G+ YP
Sbjct: 229 ICRDKDKYLRNPCSTEGKFVVIELSEETLVNTIKIANFEHYSSNLKDFEILGTLVYPTDT 288
Query: 233 EEWELLGRFTADNAKHAQRFVLPDPRWTRYLRLRLATHYGSGFYCILSYLEVYGIDAVEQ 292
W LG FTA N KH Q F DP+W RYL+L L +HYGS FYC LS LEVYG+DAVE+
Sbjct: 289 --WVHLGNFTALNMKHEQNFTFADPKWVRYLKLNLLSHYGSEFYCTLSLLEVYGVDAVER 346
Query: 293 MLQEII 298
ML+++I
Sbjct: 347 MLEDLI 352
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 28/184 (15%)
Query: 370 KPAAAGRFHGDAVLKIMMQKMRSLELGLSTLEDYTKALNHRYGAKLPDLHTGLSQTTMAL 429
K R GD VLKI+MQK+RSL++ LS LE Y + + +YG ++ S+ +
Sbjct: 423 KHQPGSRMPGDTVLKILMQKIRSLDVSLSVLESYLEERSLKYGMIFKEMDLEASKREKEV 482
Query: 430 DRMKADVRDLVEWKGNVAKDLGELKEWRSNVE--------EMRSIQET----------MQ 471
+ M+ +V + E + N K+ E+++WR VE E ++E M+
Sbjct: 483 ETMRLEVEGMKEREENTKKEAMEMRKWRMRVETELEKAENEKEKVKERLEQVLERLEWME 542
Query: 472 NKELAVLSISXXXXXXXXXXXXXDRVLFLFTRKGAAAAERMCGASKGWILVLASSSFTTF 531
K + V +I V+ + G AE+ G + W+L+L SS+F F
Sbjct: 543 KKGVVVFTICVGFGTIA--------VVAVVFGMGIVRAEKQGGLA--WLLLLISSTFVMF 592
Query: 532 LVLL 535
++ L
Sbjct: 593 ILSL 596
>AT1G22882.1 | chr1:8099150-8101220 FORWARD LENGTH=661
Length = 660
Score = 228 bits (580), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 106/183 (57%), Positives = 133/183 (72%), Gaps = 4/183 (2%)
Query: 116 FRSRILQGKAENGRVPDGATPAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAANILGG 175
F+SR + N + D + HR+EP G EYNYA+ASKGAKVL+ N+EAKGAA+IL
Sbjct: 233 FKSRA--SNSRNKSLSDQVSGVIHRMEPGGKEYNYASASKGAKVLSSNKEAKGAASILSR 290
Query: 176 DKDRYLRNPCSADDKFVDVELSEETLVRTIGLANLEHYSSNFRDFELYGSPSYPAPAEEW 235
D D+YLRNPCS + KFV VELSEETLV TI +AN EHYSSN ++FEL G+ Y P + W
Sbjct: 291 DNDKYLRNPCSTEGKFVVVELSEETLVNTIKIANFEHYSSNLKEFELQGTLVY--PTDTW 348
Query: 236 ELLGRFTADNAKHAQRFVLPDPRWTRYLRLRLATHYGSGFYCILSYLEVYGIDAVEQMLQ 295
+G FTA N KH Q F L +P+W RYL+L +HYGS FYC LS +EVYG+DAVE+ML+
Sbjct: 349 VHMGNFTASNVKHEQNFTLLEPKWVRYLKLNFISHYGSEFYCTLSLIEVYGVDAVERMLE 408
Query: 296 EII 298
++I
Sbjct: 409 DLI 411
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 376 RFHGDAVLKIMMQKMRSLELGLSTLEDYTKALNHRYGAKLPDLHTGLSQTTMALDRMKAD 435
R GD VLKI+MQK+RSL+L LS LE Y + LN RYG ++ A+ ++ D
Sbjct: 493 RMPGDTVLKILMQKLRSLDLNLSILERYLEELNLRYGNIFKEMDREAGVREKAIVALRLD 552
Query: 436 VRDLVEWKGNVAKDLGELKEWRSNV------------------EEMRSIQETMQNKELAV 477
+ + E + + + E+KEWR V E++ E M+ K L V
Sbjct: 553 LEGMKERQEGMVSEAEEMKEWRKRVEAEMEKAEKEKENIRQSLEQVSKRLEWMEKKCLTV 612
Query: 478 LSISXXXXXXXXXXXXXDRVLFLFTRKGAAAAERMCGASKGWILVLASSSFTTFLVLL 535
++ V+ + G AE+ S W+L+L SS+F F++ L
Sbjct: 613 FTVCLGFGIIA--------VIAVVIGMGTGLAEKT--GSGAWLLLLISSTFIMFVLSL 660
>AT4G23950.2 | chr4:12442297-12444330 FORWARD LENGTH=563
Length = 562
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 174/318 (54%), Gaps = 50/318 (15%)
Query: 3 GGLREVSLSVVFSVWCLLFLLRSQFLHSQTD--PSDFYDDVEDGMRENYCKVMPLEAYIF 60
G E S+S+V +WC LFL+ S+ S D +D + DG + K + + +F
Sbjct: 36 GSFFERSISLVLLLWCFLFLVYSKLGQSHDDYGNADRIGNYTDG---SVSKTLNSTSSVF 92
Query: 61 P----TEYN-----------------ASAAAPTCQPSLHPPDQPQQETDHRSLEPFNNTT 99
P E N + A C+ L P++ ++LE +
Sbjct: 93 PQATEKENNFCLLRKGQLQDVYEHVLVNNALLICKVVL-----PERRISKKTLEARD--- 144
Query: 100 GGKSSXXXXXXXXXXXFRSRILQGKAENGRVPDGATPAAHRLEPSGAEYNYAAASKGAKV 159
+ L+ + V +G +RLEP G YNYA+A KGAKV
Sbjct: 145 -----------PRYVNLEDKSLKVNGSSQLVNNGTR---YRLEPDGNGYNYASAMKGAKV 190
Query: 160 LAHNREAKGAANILGGDKDRYLRNPCSADDKFVDVELSEETLVRTIGLANLEHYSSNFRD 219
+ HN+EAKGA+N+LG D D+YLRNPCS DK+V +EL+EETLV T+ +AN EHYSSN ++
Sbjct: 191 VDHNKEAKGASNVLGKDHDKYLRNPCSVSDKYVVIELAEETLVDTVRIANFEHYSSNPKE 250
Query: 220 FELYGSPSYPAPAEEWELLGRFTADNAKHAQRFVLPDPRWTRYLRLRLATHYGSGFYCIL 279
F L GS S+ P++ W G F A N K Q F LP+P+W RYL+L L +HYGS FYC L
Sbjct: 251 FSLSGSLSF--PSDMWTPAGSFAAANVKQIQSFRLPEPKWLRYLKLNLVSHYGSEFYCTL 308
Query: 280 SYLEVYGIDAVEQMLQEI 297
S +EV+GIDA+EQML+++
Sbjct: 309 SVVEVFGIDALEQMLEDL 326
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 27/192 (14%)
Query: 363 MTVAGDGKPAAAGRFHGDAVLKIMMQKMRSLELGLSTLEDYTKALNHRYGAKLPDLHTGL 422
+ + GD K + + VLK+MMQK++ +E+ LS LED K +N K P++ +
Sbjct: 378 INIIGDKKYEVKEKHN---VLKVMMQKVKLIEMNLSLLEDSVKKMND----KQPEVSLEM 430
Query: 423 SQTTMALDRMKADVRDLVEWKGNVA-KDLGELKEWRS------------------NVEEM 463
+T + +++ KAD+R++ EWKG + K+L +L+ W++ +VE++
Sbjct: 431 KKTLVLVEKSKADIREITEWKGKMQEKELRDLELWKTLVASRVESLARGNSALRLDVEKI 490
Query: 464 RSIQETMQNKELAVLSISXXXXXXXXXXXXXDRVLFLFTRKGAAAAERMCGASKGWILVL 523
Q +++KEL VL IS R L+ F R GW+++L
Sbjct: 491 VKEQANLESKELGVLLISLFFVVLATIRLVSTR-LWAFLGMSITDKARSLWPDSGWVMIL 549
Query: 524 ASSSFTTFLVLL 535
SSS F+ LL
Sbjct: 550 LSSSIMIFIHLL 561
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,236,327
Number of extensions: 401633
Number of successful extensions: 1039
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 6
Length of query: 537
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 434
Effective length of database: 8,282,721
Effective search space: 3594700914
Effective search space used: 3594700914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)