BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0595600 Os01g0595600|AK066814
         (302 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24420.1  | chr3:8863111-8864883 REVERSE LENGTH=274            197   7e-51
AT3G03990.1  | chr3:1033788-1034591 FORWARD LENGTH=268            184   7e-47
AT4G37470.1  | chr4:17617045-17618363 REVERSE LENGTH=271          182   2e-46

>AT3G24420.1 | chr3:8863111-8864883 REVERSE LENGTH=274
          Length = 273

 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 157/262 (59%), Gaps = 6/262 (2%)

Query: 4   LNPRVVGCGERTLVLSHGYGGSQAIWDRVLPHLAETNKVVLXXXXXXXXXXXXXXXXXXX 63
           +N +++G GER++VL+HG+GG Q++WD+++P L+++ KV++                   
Sbjct: 14  MNAKIIGSGERSMVLAHGFGGDQSVWDKIIPVLSQSFKVLVFDWLFSGAIKDQTLYDPSK 73

Query: 64  XXXXXXXXXXXXLVALMEEMGVSGAVYVGHSMAGMIGCIASINRPGLFTHLVLVGASPRY 123
                       L+ALMEE+     V+VGHSM+G+IGC ASI RP LFT+L+L+ ASPRY
Sbjct: 74  YNSLDVFSDD--LIALMEELKFGPVVFVGHSMSGVIGCAASIKRPDLFTNLLLIAASPRY 131

Query: 124 INSDDYEGGFDEPEIDAMLATISSDFLSWAKGFVPLIVGAAADNPSAAETLARTFFAMDP 183
           INS+DY+GGF+  +ID ++ +I S++ +WA  F   +V +   +  + +   ++   M P
Sbjct: 132 INSEDYKGGFESKDIDTIITSIGSNYEAWAVDFSSFVVDSR--DSLSVQRFEKSLKKMKP 189

Query: 184 RVADALARMIFLGDNRGVLGRVAAPCTLVHASGDPAAPPCVGRYMEGRIGRAALVTV--D 241
             A ALA+++F  D R +LG+V+ PC ++    D   P  V  +M+ +I   + V +  D
Sbjct: 190 ETALALAKIVFGSDEREILGQVSVPCHVIQPGNDVVVPVSVAYFMQEKIKGKSTVEIIED 249

Query: 242 SAGHFPQLVAPDEMLRILDAVL 263
           + GHFPQ+ +  E+L ++  +L
Sbjct: 250 AIGHFPQMTSHLELLGVMRRLL 271



>AT3G03990.1 | chr3:1033788-1034591 FORWARD LENGTH=268
          Length = 267

 Score =  184 bits (466), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 144/261 (55%), Gaps = 6/261 (2%)

Query: 4   LNPRVVGCGERTLVLSHGYGGSQAIWDRVLPHLAETNKVVLXXXXXXXXXXXXXXXXXXX 63
           LN RVVG G+R L L+HG+G  Q+ W  +LP+  +  +VVL                   
Sbjct: 10  LNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNRY 69

Query: 64  XXXXXXXXXXXXLVALMEEMGVSGAVYVGHSMAGMIGCIASINRPGLFTHLVLVGASPRY 123
                       L+ +++ +G+    YVGHS++ MIG IASI RP LF+ L+L+G SPR+
Sbjct: 70  TTLDPYVDD---LLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRF 126

Query: 124 INSDDYEGGFDEPEIDAMLATISSDFLSWAKGFVPLIVGAAADNPSAAETLARTFFAMDP 183
           +N +DY GGF+E EI+ + + + +++ +W  GF PL VG  AD P+A    +RT F M P
Sbjct: 127 LNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVG--ADVPAAVREFSRTLFNMRP 184

Query: 184 RVADALARMIFLGDNRGVLGRVAAPCTLVHASGDPAAPPCVGRYMEGRIGRAALV-TVDS 242
            ++  ++R +F  D RGVLG V  P  ++  + D + P  V  Y+   +G    V T+ +
Sbjct: 185 DISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKT 244

Query: 243 AGHFPQLVAPDEMLRILDAVL 263
            GH PQL AP ++ + L   L
Sbjct: 245 EGHLPQLSAPAQLAQFLRRAL 265



>AT4G37470.1 | chr4:17617045-17618363 REVERSE LENGTH=271
          Length = 270

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 146/256 (57%), Gaps = 5/256 (1%)

Query: 5   NPRVVGCGERTLVLSHGYGGSQAIWDRVLPHLAETNKVVLXXXXXXXXXXXXXXXXXXXX 64
           N +V+G GE T+VL HG+G  Q++W  ++PHL +  +VVL                    
Sbjct: 9   NVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYS 68

Query: 65  XXXXXXXXXXXLVALMEEMGVSGAVYVGHSMAGMIGCIASINRPGLFTHLVLVGASPRYI 124
                      L+A++E++ +   ++VGHS++ MIG +AS+NRP LF+ +V++ ASPRY+
Sbjct: 69  NLEGYSFD---LIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYV 125

Query: 125 NSDDYEGGFDEPEIDAMLATISSDFLSWAKGFVPLIVGAAADNPSAAETLARTFFAMDPR 184
           N  DY+GGF++ +++ +   I S++ +W  GF PL VG   D+  A +  +RT F M P 
Sbjct: 126 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDS-IAVQEFSRTLFNMRPD 184

Query: 185 VADALARMIFLGDNRGVLGRVAAPCTLVHASGDPAAPPCVGRYMEGRIGRAALVTV-DSA 243
           +A ++ + IF  D R +L  V  PC ++ +  D A P  V  Y+   +G  ++V V  S 
Sbjct: 185 IALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSD 244

Query: 244 GHFPQLVAPDEMLRIL 259
           GH PQL +PD ++ ++
Sbjct: 245 GHLPQLSSPDSVIPVI 260



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,643,067
Number of extensions: 199092
Number of successful extensions: 420
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)