BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0594700 Os01g0594700|Os01g0594700
         (379 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67290.1  | chr5:26848419-26849755 REVERSE LENGTH=407          161   7e-40

>AT5G67290.1 | chr5:26848419-26849755 REVERSE LENGTH=407
          Length = 406

 Score =  161 bits (407), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 95/128 (74%), Gaps = 1/128 (0%)

Query: 144 PWSGGEVYICGITKDEEVPNDPATITGDPDSIAALHEIAGRVSSQLKREEGAEVVAEQAC 203
           P   GEVYICG++  EEVP+D   +T +P+SI  L  +A  VSS L  EE A V AEQAC
Sbjct: 280 PRPTGEVYICGMSSQEEVPDDADQVTSNPESIQVLKRVAKTVSSYLN-EENALVKAEQAC 338

Query: 204 YMPCTSDGLPVIGEMPGVKGCYVATGHGGWGILNAPATGAALAELILNGSASIFDLSPFS 263
           ++P T DG+PVIGE+PG+KGCYV TGH  WGILN PATGAALAELI++G A+  DLS FS
Sbjct: 339 FLPSTEDGVPVIGEIPGIKGCYVGTGHSCWGILNGPATGAALAELIVDGVATSVDLSRFS 398

Query: 264 PARFLNKR 271
           P+RF  +R
Sbjct: 399 PSRFSKRR 406



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,615,944
Number of extensions: 303897
Number of successful extensions: 831
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 279
Effective length of database: 8,364,969
Effective search space: 2333826351
Effective search space used: 2333826351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)