BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0589700 Os01g0589700|J090048E23
         (231 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22790.1  | chr1:8070271-8071292 FORWARD LENGTH=217             79   2e-15

>AT1G22790.1 | chr1:8070271-8071292 FORWARD LENGTH=217
          Length = 216

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 82/192 (42%), Gaps = 12/192 (6%)

Query: 4   MLLAVEXXXXXXXXXXXXXXXXXXXXXXRKDEEKPVKVSPWNQYRLVDR--EAEQVYHLA 61
           MLLAVE                       KD ++P++V PWN Y++VD+  EA+ V  L 
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDKDVDRPMRVVPWNHYQVVDQEPEADPVLQLD 60

Query: 62  SRKDQAPGKCAP-FICFGRAAAGLEGASPPKLXXXXXXXXXXXXXXXXXXXXXXG----- 115
           S K++    CA  F CFG A+AGLE  SP K+                      G     
Sbjct: 61  SIKNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQIS 120

Query: 116 -SLTGNEKKG---CLKSNSRRDSLEHCIVVSXXXXXXXXXXXVQTLKSGMERRKVQWTDT 171
            +  G+ K+     L+S+ +R S+     +               L   M RRKVQW D 
Sbjct: 121 EADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYETLSVDGSDLTGDMARRKVQWPDA 180

Query: 172 CGKELFEIREFE 183
           CG EL ++REFE
Sbjct: 181 CGSELTQVREFE 192



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,851,820
Number of extensions: 120133
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 136
Effective length of database: 8,502,049
Effective search space: 1156278664
Effective search space used: 1156278664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)