BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0589300 Os01g0589300|AK103040
(300 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G49950.3 | chr1:18494439-18496713 REVERSE LENGTH=301 217 5e-57
AT5G67580.1 | chr5:26955843-26957073 REVERSE LENGTH=300 169 2e-42
AT3G49850.1 | chr3:18489451-18490731 FORWARD LENGTH=296 154 4e-38
AT1G72740.1 | chr1:27380499-27382687 REVERSE LENGTH=288 124 8e-29
AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297 114 9e-26
AT1G54260.1 | chr1:20257340-20259176 FORWARD LENGTH=198 54 1e-07
AT2G30620.1 | chr2:13045360-13046267 FORWARD LENGTH=274 50 1e-06
AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631 49 4e-06
>AT1G49950.3 | chr1:18494439-18496713 REVERSE LENGTH=301
Length = 300
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 158/253 (62%), Gaps = 31/253 (12%)
Query: 1 MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
MGAPKQ+WT EEE+ALK+GV KHG GKWRTIL+DPEF+ +L LRSNVDLKDKWRN+SV A
Sbjct: 1 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMA 60
Query: 61 GGYGSRERARVALKGGKRGPK------ALAEPMDADEKNPXXXXXXXXXXQPLAVVVEPM 114
G+GSRE++R+A+K PK AL + +DE+N +
Sbjct: 61 NGWGSREKSRLAVKRTFSLPKQEENSLALTNSLQSDEEN--------------VDATSGL 106
Query: 115 QLESTPEKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLK 174
Q+ S P + RLD LI+EAI LKEP G N+TTI +YIE+QY P DF+RLLSTKLK
Sbjct: 107 QVSSNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLK 166
Query: 175 ALVATGKLIKVNQKYRIAPSSNSS----------GGKSIKVYSTGEMNIENNNVRQLSKP 224
L + GKL+KV +KYRI S+ S GGK + S + + V ++
Sbjct: 167 YLTSCGKLVKVKRKYRIPNSTPLSSHRRKGLGVFGGKQ-RTSSLPSPKTDIDEVNFQTRS 225
Query: 225 QVDAELDKMKSMS 237
Q+D E+ +MKSM+
Sbjct: 226 QIDTEIARMKSMN 238
>AT5G67580.1 | chr5:26955843-26957073 REVERSE LENGTH=300
Length = 299
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 143/244 (58%), Gaps = 11/244 (4%)
Query: 1 MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
MGAPKQ+WT EEEAALKAGV KHGTGKWRTIL D EF+ +L+ RSNVDLKDKWRN+SVTA
Sbjct: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 60
Query: 61 GGYGSRERARVALKGGKRGPKALAEPMDADEKNPXXXXXXXXXXQPLAVVVEPMQLESTP 120
+GSR++A++AL KR P + + +P + T
Sbjct: 61 -LWGSRKKAKLAL---KRTPPGTKQDDNNTALTIVALTNDDERAKPTSPGGSGGGSPRTC 116
Query: 121 EKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVATG 180
++S+ LD +I EAI L+E GS+RT+I YIEE + P + +R ++ +LK L + G
Sbjct: 117 ASKRSITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNG 176
Query: 181 KLIKVNQKYRIAPSSNSSGG--KSIKVYSTGE-----MNIENNNVRQLSKPQVDAELDKM 233
L+K+ KYR + + +G K+ +++ G E N L+K +VD EL +
Sbjct: 177 TLVKIKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMI 236
Query: 234 KSMS 237
K M+
Sbjct: 237 KGMT 240
>AT3G49850.1 | chr3:18489451-18490731 FORWARD LENGTH=296
Length = 295
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 134/241 (55%), Gaps = 22/241 (9%)
Query: 1 MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
MGAPK +WT EEE ALKAGV KHGTGKWRTIL DP ++ +L+ RSNVDLKDKWRN+SVTA
Sbjct: 1 MGAPKLKWTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNISVTA 60
Query: 61 GGYGSRERARVALK-----GGKRGPKALAEPMDADEKNPXXXXXXXXXXQPLAVVVEPMQ 115
+GSR++A++ALK G ++ A A + N P A EP
Sbjct: 61 -LWGSRKKAKLALKRTPLSGSRQDDNATAITI-VSLANGDVGGQQIDAPSPPAGSCEP-- 116
Query: 116 LESTPEKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKA 175
P SV D +ILEAI LK P G + +I YIEE + D +RL++++LK
Sbjct: 117 ----PRPSTSV---DKIILEAITSLKRPFGPDGKSILMYIEENFKMQPDMKRLVTSRLKY 169
Query: 176 LVATGKLIKVNQKYRIAPSSNSSGGKSIKVYSTGEMNIEN------NNVRQLSKPQVDAE 229
L G L+K KYRI+ + + G E N EN N V+ L+K QV E
Sbjct: 170 LTNVGTLVKKKHKYRISQNYMAEGEGQRSPQLLLEGNKENTPKPEENGVKNLTKSQVGGE 229
Query: 230 L 230
+
Sbjct: 230 V 230
>AT1G72740.1 | chr1:27380499-27382687 REVERSE LENGTH=288
Length = 287
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 104/187 (55%), Gaps = 8/187 (4%)
Query: 1 MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
MG K +WTAEEE AL AG+ KHG GKW+ ILRDPEF L RSN+DLKDKWRNLSV
Sbjct: 1 MGNQKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPP 60
Query: 61 GGYGSRERARVALKGGKRGPKALAEPMDADEKNPXXXXXXXXXXQPLAVVVEPMQLESTP 120
G +AR A K + G A+ DA P + E P
Sbjct: 61 GTQSLTNKARPA-KVKEEGDTPAADANDA------VTIPRPIPTIPPPPGRRTLPSELIP 113
Query: 121 -EKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVAT 179
E K+ R D +I EA+ L + +GS+ ++I +IE ++ P +F+R+LST+L+ L A
Sbjct: 114 DENTKNAPRYDGVIFEALSALADGNGSDVSSIYHFIEPRHEVPPNFRRILSTRLRRLAAQ 173
Query: 180 GKLIKVN 186
KL KV+
Sbjct: 174 SKLEKVS 180
>AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297
Length = 296
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 1 MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
MG K +WTAEEE AL AGV KHG GKW+ ILRDPE L RSN+DLKDKWRNLSV
Sbjct: 1 MGNQKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLSVAP 60
Query: 61 GGYGSRERARV------ALKGGKRGPKALAEPMDADEKNPXXX-----XXXXXXXQPLAV 109
G GS+++ R A A+ P + +P +
Sbjct: 61 GIQGSKDKIRTPKIKAAAFHLAAAAAAAIVTPTHSGHSSPVATLPRSGSSDLSIDDSFNI 120
Query: 110 VVEPMQLESTPEKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLL 169
VV+P K+ R D +I EA+ L + +GS+ + I ++IE++ P +F+R+L
Sbjct: 121 VVDP----------KNAPRYDGMIFEALSNLTDANGSDVSAIFNFIEQRQEVPPNFRRML 170
Query: 170 STKLKALVATGKLIKVNQ 187
S++L+ L A GKL KV+
Sbjct: 171 SSRLRRLAAQGKLEKVSH 188
>AT1G54260.1 | chr1:20257340-20259176 FORWARD LENGTH=198
Length = 197
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 127 ARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVATGKLIKVN 186
AR D ++ EA+ + + +GSN I +IE Q+ P++F++LLS L LV+ KL KV
Sbjct: 5 ARYDAMVFEAVSTINDENGSNLKEILRFIEGQHEVPQNFKKLLSYSLGILVSQDKLKKVR 64
Query: 187 QKYRIA 192
+Y+I+
Sbjct: 65 NRYKIS 70
>AT2G30620.1 | chr2:13045360-13046267 FORWARD LENGTH=274
Length = 273
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 130 DDLILEAIKKLKEPSGSNRTTISSYIEEQY--WPPEDFQRLLSTKLKALVATGKLIKVNQ 187
+++I +AI LKE +GS++ I +IEE++ PP F++LL LK LVA+ KL+KV
Sbjct: 66 EEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPP-TFRKLLLVNLKRLVASEKLVKVKA 124
Query: 188 KYRIAPSSNSSG 199
++I PS+ S+
Sbjct: 125 SFKI-PSARSAA 135
>AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631
Length = 630
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 8 WTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNL 56
WT E A L GV+K+G GKW I + + R++VDLKDKWRNL
Sbjct: 543 WTLSEIAKLVEGVSKYGAGKWSEIKK--HLFSSHSYRTSVDLKDKWRNL 589
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,256,278
Number of extensions: 197534
Number of successful extensions: 718
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 11
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)