BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0587500 Os01g0587500|Os01g0587500
(172 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27140.1 | chr2:11598496-11599264 REVERSE LENGTH=225 67 4e-12
AT5G20970.1 | chr5:7123132-7124001 FORWARD LENGTH=250 55 2e-08
AT5G04890.1 | chr5:1427217-1428390 FORWARD LENGTH=367 53 9e-08
AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158 49 2e-06
>AT2G27140.1 | chr2:11598496-11599264 REVERSE LENGTH=225
Length = 224
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 26 DLQPEVKWHDGAAGYVARLDLAGFRKEEFRVQVDGAGRVTVRGQRPAGH---VRLHREFQ 82
+ +P W + L GFRKE+ +VQV ++ V G RPAG +R +EF
Sbjct: 16 EFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKEFP 75
Query: 83 LPPAADVDRIAARFDGATLCLTVPK 107
+PP DVD ++A+F+GA L + +P+
Sbjct: 76 IPPNIDVDSVSAKFEGANLVVRLPR 100
>AT5G20970.1 | chr5:7123132-7124001 FORWARD LENGTH=250
Length = 249
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 26 DLQPEVKWHDGAAGYVARLDLAGFRKEEFRVQVDGAGRVTVRGQRPAG---HVRLHREFQ 82
+ +P +W V DL GF+KE+ +V V ++ + G+RP G +R H+E
Sbjct: 12 EFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQEIP 71
Query: 83 LPPAADVDRIAARFDGATLCLTVPK 107
+P D+D ++A F L + PK
Sbjct: 72 VPLTVDIDSVSAMFKDNKLYIRHPK 96
>AT5G04890.1 | chr5:1427217-1428390 FORWARD LENGTH=367
Length = 366
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 26 DLQPEVKWHDGAAGYVARLDLAGFRKEEFRVQ-VDGAGRVTVRGQRPAGH---VRLHREF 81
D P+ +W D + +DL GF KE+ +V V + + V G+RP + R + F
Sbjct: 18 DFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVF 77
Query: 82 QLPPAADVDRIAARFDGATLCLTVPK 107
+P VD+I F L +T+PK
Sbjct: 78 TVPQNCLVDKIHGSFKNNVLTITMPK 103
>AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158
Length = 157
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 30 EVKWHDGAAGYVARLDLAGFRKEEFRVQVDGAGRVTVRGQRPAGHV-------------- 75
+V W + +V + DL G RKEE +V+V+ + + G+R +
Sbjct: 51 KVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSG 110
Query: 76 RLHREFQLPPAADVDRIAARFDGATLCLTVPKRP 109
+ R F+LP A ++ I A + L +TVPK P
Sbjct: 111 KFTRRFRLPENAKMEEIKASMENGVLSVTVPKVP 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,907,793
Number of extensions: 99619
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 4
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)