BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0587000 Os01g0587000|AK067605
         (351 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28710.1  | chr3:10773144-10775594 REVERSE LENGTH=352          681   0.0  
AT3G28715.1  | chr3:10778025-10780350 FORWARD LENGTH=352          681   0.0  

>AT3G28710.1 | chr3:10773144-10775594 REVERSE LENGTH=352
          Length = 351

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/351 (89%), Positives = 344/351 (98%)

Query: 1   MYGWEMLSFNIHDGFLEAIVRGNRSGLLTAADYNNLCQCENLDDVKMHLTATEYGPYLQN 60
           MYG+E L+FNIH G+LEAIVRG+R+GLLT ADYNNLCQCENLDD+KMHL+AT+YG YLQN
Sbjct: 1   MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGSYLQN 60

Query: 61  EPSPLHTTTIVEKCTLKLVDEYKHMMCQATEPLSTFLQYITYGHMIDNVVLIVTGTLHER 120
           EPSPLHTTTIVEKCTLKLVD+YKHM+CQATEP+STFL+YI YGHMIDNVVLIVTGTLHER
Sbjct: 61  EPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHER 120

Query: 121 DVNELLEKCHPLGMFDSIASLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
           DV EL+EKCHPLGMFDSIA+LAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEI
Sbjct: 121 DVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEI 180

Query: 181 MRNTLYKAYLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNITINSIGTELTRDDRRKL 240
           MRNTLYKAYLEDFYKFC+KLGGATAEIM DLL+FEADRRAVNITINSIGTELTR+DR+KL
Sbjct: 181 MRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKL 240

Query: 241 YSNFGLLYPYGHEELAVCEDVDQVRGVMEKYPPYQAIFAKISYGESQMLDKAFYEEEVRR 300
           YSNFGLLYPYGHEELA+CED+DQVRGVMEKYPPYQAIF+K+SYGESQMLDKAFYEEEVRR
Sbjct: 241 YSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRR 300

Query: 301 LCLSFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKNRVHDSVVFIF 351
           LCL+FEQQFHYAVFFAY+RLREQEIRNLMWISECVAQNQK+R+HDSVV++F
Sbjct: 301 LCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351



>AT3G28715.1 | chr3:10778025-10780350 FORWARD LENGTH=352
          Length = 351

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/351 (89%), Positives = 344/351 (98%)

Query: 1   MYGWEMLSFNIHDGFLEAIVRGNRSGLLTAADYNNLCQCENLDDVKMHLTATEYGPYLQN 60
           MYG+E L+FNIH G+LEAIVRG+R+GLLT ADYNNLCQCENLDD+KMHL+AT+YGPYLQN
Sbjct: 1   MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQN 60

Query: 61  EPSPLHTTTIVEKCTLKLVDEYKHMMCQATEPLSTFLQYITYGHMIDNVVLIVTGTLHER 120
           EPSPLHTTTIVEKCTLKLVD+YKHM+CQATEP+STFL+YI YGHMIDNVVLIVTGTLHER
Sbjct: 61  EPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHER 120

Query: 121 DVNELLEKCHPLGMFDSIASLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
           DV EL+EKCHPLGMFDSIA+LAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEI
Sbjct: 121 DVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEI 180

Query: 181 MRNTLYKAYLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNITINSIGTELTRDDRRKL 240
           MRNTLYKAYLEDFY FC+KLGGATAEIM DLL+FEADRRAVNITINSIGTELTR+DR+KL
Sbjct: 181 MRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKL 240

Query: 241 YSNFGLLYPYGHEELAVCEDVDQVRGVMEKYPPYQAIFAKISYGESQMLDKAFYEEEVRR 300
           YSNFGLLYPYGHEELA+CED+DQVRGVMEKYPPYQAIF+K+SYGESQMLDKAFYEEEVRR
Sbjct: 241 YSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRR 300

Query: 301 LCLSFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKNRVHDSVVFIF 351
           LCL+FEQQFHYAVFFAY+RLREQEIRNLMWISECVAQNQK+R+HDSVV++F
Sbjct: 301 LCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,736,135
Number of extensions: 316979
Number of successful extensions: 670
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)