BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0580000 Os01g0580000|AK121186
(324 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29840.1 | chr1:10445735-10447422 REVERSE LENGTH=264 276 1e-74
AT3G47590.1 | chr3:17536133-17537515 REVERSE LENGTH=310 273 6e-74
AT3G47560.2 | chr3:17525575-17526977 REVERSE LENGTH=319 245 3e-65
AT5G11910.1 | chr5:3836560-3838182 REVERSE LENGTH=298 235 2e-62
AT2G19550.1 | chr2:8464533-8465531 REVERSE LENGTH=333 219 1e-57
>AT1G29840.1 | chr1:10445735-10447422 REVERSE LENGTH=264
Length = 263
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/251 (53%), Positives = 180/251 (71%), Gaps = 2/251 (0%)
Query: 73 ALEQRAVVVTNKHGEKLVGVLHHTGSSKIVVLCHGFISTKNDSLILDLMAALTKKGISVF 132
A Q+ +V+ N + EKLVG+LH TGS++IVVLCHGF STKND ++ ++ AA+ K+GIS F
Sbjct: 9 ATTQQKIVILNSNNEKLVGLLHETGSTEIVVLCHGFRSTKNDQVMKNVAAAIEKEGISAF 68
Query: 133 RFDXXXXXXXXXXXXXXXXRKEADDLHSVVSYLCKEKYDVTAIVGHSKGGDVVTLYASIY 192
RFD EADDLHSV+ Y V I+GHSKGGDVV +YAS Y
Sbjct: 69 RFDFSGNGESKGSFYFGNYNYEADDLHSVIRYFTNMNRVVPIIIGHSKGGDVVLVYASKY 128
Query: 193 DDVRLVINVSGRFDLEKGIEERIGEGSIDRINKEGYLDVKDKSGNVQYRVTKESLMERLN 252
D+R VIN+SGR+DL++GI ER+GE ++RI ++G++D+K+ GN +RVT+ESLMERLN
Sbjct: 129 QDIRNVINLSGRYDLKRGIGERLGEDYLERIKQQGFIDIKE--GNAGFRVTEESLMERLN 186
Query: 253 TDIRAVSMSITKECRFFTVHGSADETIPVEDAYKFAKHIPNHKLQVIEGANHNYTAHREE 312
TD+ + I KECR TVHGSADE IP+EDA +FAK IPNHKL+++EGA+H YT H+ +
Sbjct: 187 TDMHEACLKIDKECRVLTVHGSADEVIPLEDAKEFAKIIPNHKLEIVEGADHCYTKHQSQ 246
Query: 313 LADAVVDFITS 323
L V++FI +
Sbjct: 247 LITNVMEFIKT 257
>AT3G47590.1 | chr3:17536133-17537515 REVERSE LENGTH=310
Length = 309
Score = 273 bits (699), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 180/252 (71%), Gaps = 4/252 (1%)
Query: 73 ALEQRAVVVTNKHGEKLVGVLHHTGSSKIVVLCHGFISTKNDSLILDLMAALTKKGISVF 132
++++ +V+ N+H EKLVG+LH TGS+ IVVLCHGF S K++ ++ ++ AA+ K+GIS F
Sbjct: 55 GIQEQRIVIPNRHNEKLVGLLHETGSTDIVVLCHGFRSNKSNQIMNNVAAAIQKEGISAF 114
Query: 133 RFDXXXXXXXXXXXXXXXXRKEADDLHSVVSYLCKEKYDVTAIVGHSKGGDVVTLYASIY 192
RFD EADDLHSVV Y + V I+GHSKGGDVV LYAS Y
Sbjct: 115 RFDFSGNGESEGSFYYGNYNHEADDLHSVVQYFSNKNRVVPIILGHSKGGDVVLLYASKY 174
Query: 193 DDVRLVINVSGRFDLEKGIEERIGEGSIDRINKEGYLDVKD-KSGNVQYRVTKESLMERL 251
DVR VIN+SGR+DL+KGI ER+GE ++RI ++G++DV D KSG YRVT++SLM+RL
Sbjct: 175 HDVRNVINLSGRYDLKKGIRERLGEDFLERIKQQGFIDVGDGKSG---YRVTEKSLMDRL 231
Query: 252 NTDIRAVSMSITKECRFFTVHGSADETIPVEDAYKFAKHIPNHKLQVIEGANHNYTAHRE 311
+TDI + I KECR TVHGS DE IPVEDA +FAK IPNHKL+++EGANH YT H+
Sbjct: 232 STDIHEACLKIDKECRVLTVHGSEDEVIPVEDAKEFAKIIPNHKLEIVEGANHGYTEHQS 291
Query: 312 ELADAVVDFITS 323
+L V++FI +
Sbjct: 292 QLVSTVMEFIKT 303
>AT3G47560.2 | chr3:17525575-17526977 REVERSE LENGTH=319
Length = 318
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 134/299 (44%), Positives = 176/299 (58%), Gaps = 51/299 (17%)
Query: 76 QRAVVVTNKHGEKLVGVLHHTGSSKIVVLCHGFISTKNDSLILDLMAALTKKGISVFRFD 135
Q+ +V+ N H E LVG+LH TGS++IVVLCHGF S KN ++ ++ A+ ++GIS FRFD
Sbjct: 9 QQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFRFD 68
Query: 136 XX---------------------------XXXXXXXXXXXXXXRKEADDLHSVVSYLCKE 168
EADDLHSV+ Y
Sbjct: 69 FSGNGYVFLSCIILNKLVFVLTLGLWCFHSFRESEGSFYYGNYNYEADDLHSVIQYFSNL 128
Query: 169 KYDVTAIVGHSKGGDVVTLYASIYDDVRLVINVSGRFDLEKGIEERIGEGSIDRINKEGY 228
VT I+GHSKGGDVV LYAS Y D+ VIN+SGR+DL+KGI ER+GE ++RI ++GY
Sbjct: 129 NRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQGY 188
Query: 229 LDVKDK------------------------SGNVQYRVTKESLMERLNTDIRAVSMSITK 264
+DVKD +G+ YRVT+ESLM+RLNTD+ + I K
Sbjct: 189 IDVKDGIVIALRFSCTVIRTLVLLSMYWFVTGDSGYRVTEESLMDRLNTDMHEACLKIDK 248
Query: 265 ECRFFTVHGSADETIPVEDAYKFAKHIPNHKLQVIEGANHNYTAHREELADAVVDFITS 323
ECR TVHGS DET+PVEDA +FAK IPNH+LQ++EGA+H YT ++ +L V++FI S
Sbjct: 249 ECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIKS 307
>AT5G11910.1 | chr5:3836560-3838182 REVERSE LENGTH=298
Length = 297
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 165/252 (65%)
Query: 70 EPHALEQRAVVVTNKHGEKLVGVLHHTGSSKIVVLCHGFISTKNDSLILDLMAALTKKGI 129
E ++ + VV+ N HGEKLVGVLH TGS++ VV+CHGF S+KN +L + + + I
Sbjct: 15 EKSEIQHQRVVIENSHGEKLVGVLHDTGSTETVVICHGFRSSKNRIPMLTIASFFERAMI 74
Query: 130 SVFRFDXXXXXXXXXXXXXXXXRKEADDLHSVVSYLCKEKYDVTAIVGHSKGGDVVTLYA 189
S FRFD R+E +DL SV+ +L ++AI+GHSKGG+VV LYA
Sbjct: 75 SSFRFDFAGNGESQGSFQYGNYRREVEDLRSVLQHLRGVNRVISAIIGHSKGGNVVLLYA 134
Query: 190 SIYDDVRLVINVSGRFDLEKGIEERIGEGSIDRINKEGYLDVKDKSGNVQYRVTKESLME 249
+ Y+DV+ V+N+SGRF L++GIE R+G+ RI G++DV ++ G +YRVT+ESLM+
Sbjct: 135 AKYNDVQTVVNISGRFFLDRGIEFRLGKDYFKRIKDNGFIDVSNRKGKFEYRVTEESLMD 194
Query: 250 RLNTDIRAVSMSITKECRFFTVHGSADETIPVEDAYKFAKHIPNHKLQVIEGANHNYTAH 309
RL T+ +SI + CR TVHGS D + V +A +FAK I NHKL VIEGA+H +T+H
Sbjct: 195 RLTTNAHEACLSIRENCRVLTVHGSNDRIVHVTEASEFAKQIKNHKLYVIEGADHEFTSH 254
Query: 310 REELADAVVDFI 321
+ +LA V+ F
Sbjct: 255 QHQLASIVLSFF 266
>AT2G19550.1 | chr2:8464533-8465531 REVERSE LENGTH=333
Length = 332
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/247 (47%), Positives = 163/247 (65%), Gaps = 9/247 (3%)
Query: 79 VVVTNKHGEKLVGVLHHTGSSKIVVLCHGFISTKNDSLILDLMAALTKKGISVFRFDXXX 138
+V+ N+ EKLVG+LH TGS ++VVLCHGF S K + ++ ++ AL K+ IS FRFD
Sbjct: 6 IVIPNRRNEKLVGLLHETGSKEVVVLCHGFRSDKTNKILKNVATALEKEKISSFRFDFSG 65
Query: 139 XXXXXXXXXXXXXRKEA-DDLHSVVSYLCKEKYD---VTAIVGHSKGGDVVTLYASIYDD 194
EA DDLH V+ +L V I+GHSKGGDVV LYAS + D
Sbjct: 66 NGDSEGTFYYGNFNSEAEDDLHYVIQHLSSSNIMNRLVPVILGHSKGGDVVLLYASKFPD 125
Query: 195 -VRLVINVSGRFDLEKGIEERIGEGSIDRINKEGYLDVKDKSGNVQYRVTKESLMERLNT 253
+R V+N+SGRFDL+ + R+G+G I++I ++G++D + G +RVT+ESLM+RLNT
Sbjct: 126 YIRNVVNISGRFDLKNDV--RLGDGYIEKIKEQGFIDATE--GKSCFRVTQESLMDRLNT 181
Query: 254 DIRAVSMSITKECRFFTVHGSADETIPVEDAYKFAKHIPNHKLQVIEGANHNYTAHREEL 313
D+ ++I K+C+ TVHGS D +P EDA +FAK IPNHKL+++EGANH YT H++EL
Sbjct: 182 DMHQACLNIDKQCKVLTVHGSDDTVVPGEDAKEFAKVIPNHKLEIVEGANHGYTKHQKEL 241
Query: 314 ADAVVDF 320
V+F
Sbjct: 242 VSIAVEF 248
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,979,982
Number of extensions: 236649
Number of successful extensions: 806
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 6
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)