BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0579900 Os01g0579900|AK065133
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47590.1 | chr3:17536133-17537515 REVERSE LENGTH=310 314 3e-86
AT1G29840.1 | chr1:10445735-10447422 REVERSE LENGTH=264 308 2e-84
AT5G11910.1 | chr5:3836560-3838182 REVERSE LENGTH=298 291 3e-79
AT3G47560.2 | chr3:17525575-17526977 REVERSE LENGTH=319 278 3e-75
AT2G19550.1 | chr2:8464533-8465531 REVERSE LENGTH=333 264 4e-71
>AT3G47590.1 | chr3:17536133-17537515 REVERSE LENGTH=310
Length = 309
Score = 314 bits (804), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 149/249 (59%), Positives = 194/249 (77%), Gaps = 2/249 (0%)
Query: 18 QEERVVVTNKHGEKLVGLLQHMGSNKIVVICHGFTASKNDSIIVDLANALTKKGVGIFRF 77
QE+R+V+ N+H EKLVGLL GS IVV+CHGF ++K++ I+ ++A A+ K+G+ FRF
Sbjct: 57 QEQRIVIPNRHNEKLVGLLHETGSTDIVVLCHGFRSNKSNQIMNNVAAAIQKEGISAFRF 116
Query: 78 DFSGNGESEGEFQYGNYRKEADDLHSVISHLNQEKYDVKAIVGHSKGGDVVVLYASIYDD 137
DFSGNGESEG F YGNY EADDLHSV+ + + + V I+GHSKGGDVV+LYAS Y D
Sbjct: 117 DFSGNGESEGSFYYGNYNHEADDLHSVVQYFSNKNRVVPIILGHSKGGDVVLLYASKYHD 176
Query: 138 VRTVVNLSGRFHLEKGIEERLGKEFMNIIDKEGYIDVKTNSGKVLYKVTKESLMERLTTD 197
VR V+NLSGR+ L+KGI ERLG++F+ I ++G+IDV GK Y+VT++SLM+RL+TD
Sbjct: 177 VRNVINLSGRYDLKKGIRERLGEDFLERIKQQGFIDV--GDGKSGYRVTEKSLMDRLSTD 234
Query: 198 MHKACLSISKECRFFTVHGSADEIIPVEDAYEFAKHIPNHKLHVIEGANHCYTAHRKELS 257
+H+ACL I KECR TVHGS DE+IPVEDA EFAK IPNHKL ++EGANH YT H+ +L
Sbjct: 235 IHEACLKIDKECRVLTVHGSEDEVIPVEDAKEFAKIIPNHKLEIVEGANHGYTEHQSQLV 294
Query: 258 DAVVDFITS 266
V++FI +
Sbjct: 295 STVMEFIKT 303
>AT1G29840.1 | chr1:10445735-10447422 REVERSE LENGTH=264
Length = 263
Score = 308 bits (789), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 142/248 (57%), Positives = 192/248 (77%), Gaps = 2/248 (0%)
Query: 19 EERVVVTNKHGEKLVGLLQHMGSNKIVVICHGFTASKNDSIIVDLANALTKKGVGIFRFD 78
++++V+ N + EKLVGLL GS +IVV+CHGF ++KND ++ ++A A+ K+G+ FRFD
Sbjct: 12 QQKIVILNSNNEKLVGLLHETGSTEIVVLCHGFRSTKNDQVMKNVAAAIEKEGISAFRFD 71
Query: 79 FSGNGESEGEFQYGNYRKEADDLHSVISHLNQEKYDVKAIVGHSKGGDVVVLYASIYDDV 138
FSGNGES+G F +GNY EADDLHSVI + V I+GHSKGGDVV++YAS Y D+
Sbjct: 72 FSGNGESKGSFYFGNYNYEADDLHSVIRYFTNMNRVVPIIIGHSKGGDVVLVYASKYQDI 131
Query: 139 RTVVNLSGRFHLEKGIEERLGKEFMNIIDKEGYIDVKTNSGKVLYKVTKESLMERLTTDM 198
R V+NLSGR+ L++GI ERLG++++ I ++G+ID+K G ++VT+ESLMERL TDM
Sbjct: 132 RNVINLSGRYDLKRGIGERLGEDYLERIKQQGFIDIK--EGNAGFRVTEESLMERLNTDM 189
Query: 199 HKACLSISKECRFFTVHGSADEIIPVEDAYEFAKHIPNHKLHVIEGANHCYTAHRKELSD 258
H+ACL I KECR TVHGSADE+IP+EDA EFAK IPNHKL ++EGA+HCYT H+ +L
Sbjct: 190 HEACLKIDKECRVLTVHGSADEVIPLEDAKEFAKIIPNHKLEIVEGADHCYTKHQSQLIT 249
Query: 259 AVVDFITS 266
V++FI +
Sbjct: 250 NVMEFIKT 257
>AT5G11910.1 | chr5:3836560-3838182 REVERSE LENGTH=298
Length = 297
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 186/258 (72%)
Query: 18 QEERVVVTNKHGEKLVGLLQHMGSNKIVVICHGFTASKNDSIIVDLANALTKKGVGIFRF 77
Q +RVV+ N HGEKLVG+L GS + VVICHGF +SKN ++ +A+ + + FRF
Sbjct: 20 QHQRVVIENSHGEKLVGVLHDTGSTETVVICHGFRSSKNRIPMLTIASFFERAMISSFRF 79
Query: 78 DFSGNGESEGEFQYGNYRKEADDLHSVISHLNQEKYDVKAIVGHSKGGDVVVLYASIYDD 137
DF+GNGES+G FQYGNYR+E +DL SV+ HL + AI+GHSKGG+VV+LYA+ Y+D
Sbjct: 80 DFAGNGESQGSFQYGNYRREVEDLRSVLQHLRGVNRVISAIIGHSKGGNVVLLYAAKYND 139
Query: 138 VRTVVNLSGRFHLEKGIEERLGKEFMNIIDKEGYIDVKTNSGKVLYKVTKESLMERLTTD 197
V+TVVN+SGRF L++GIE RLGK++ I G+IDV GK Y+VT+ESLM+RLTT+
Sbjct: 140 VQTVVNISGRFFLDRGIEFRLGKDYFKRIKDNGFIDVSNRKGKFEYRVTEESLMDRLTTN 199
Query: 198 MHKACLSISKECRFFTVHGSADEIIPVEDAYEFAKHIPNHKLHVIEGANHCYTAHRKELS 257
H+ACLSI + CR TVHGS D I+ V +A EFAK I NHKL+VIEGA+H +T+H+ +L+
Sbjct: 200 AHEACLSIRENCRVLTVHGSNDRIVHVTEASEFAKQIKNHKLYVIEGADHEFTSHQHQLA 259
Query: 258 DAVVDFITSSEDGDNSSA 275
V+ F D+ S
Sbjct: 260 SIVLSFFKLDPKKDDESG 277
>AT3G47560.2 | chr3:17525575-17526977 REVERSE LENGTH=319
Length = 318
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/301 (48%), Positives = 190/301 (63%), Gaps = 51/301 (16%)
Query: 17 AQEERVVVTNKHGEKLVGLLQHMGSNKIVVICHGFTASKNDSIIVDLANALTKKGVGIFR 76
+ ++++V+ N H E LVGLL GS +IVV+CHGF ++KN I+ ++A A+ ++G+ FR
Sbjct: 7 STQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFR 66
Query: 77 FDFSGNG---------------------------ESEGEFQYGNYRKEADDLHSVISHLN 109
FDFSGNG ESEG F YGNY EADDLHSVI + +
Sbjct: 67 FDFSGNGYVFLSCIILNKLVFVLTLGLWCFHSFRESEGSFYYGNYNYEADDLHSVIQYFS 126
Query: 110 QEKYDVKAIVGHSKGGDVVVLYASIYDDVRTVVNLSGRFHLEKGIEERLGKEFMNIIDKE 169
V I+GHSKGGDVV+LYAS Y D+ V+NLSGR+ L+KGI ERLG++F+ I ++
Sbjct: 127 NLNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQ 186
Query: 170 GYIDVKTN------------------------SGKVLYKVTKESLMERLTTDMHKACLSI 205
GYIDVK +G Y+VT+ESLM+RL TDMH+ACL I
Sbjct: 187 GYIDVKDGIVIALRFSCTVIRTLVLLSMYWFVTGDSGYRVTEESLMDRLNTDMHEACLKI 246
Query: 206 SKECRFFTVHGSADEIIPVEDAYEFAKHIPNHKLHVIEGANHCYTAHRKELSDAVVDFIT 265
KECR TVHGS DE +PVEDA EFAK IPNH+L ++EGA+HCYT ++ +L V++FI
Sbjct: 247 DKECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIK 306
Query: 266 S 266
S
Sbjct: 307 S 307
>AT2G19550.1 | chr2:8464533-8465531 REVERSE LENGTH=333
Length = 332
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 135/255 (52%), Positives = 180/255 (70%), Gaps = 9/255 (3%)
Query: 18 QEERVVVTNKHGEKLVGLLQHMGSNKIVVICHGFTASKNDSIIVDLANALTKKGVGIFRF 77
+ ++V+ N+ EKLVGLL GS ++VV+CHGF + K + I+ ++A AL K+ + FRF
Sbjct: 2 KPTKIVIPNRRNEKLVGLLHETGSKEVVVLCHGFRSDKTNKILKNVATALEKEKISSFRF 61
Query: 78 DFSGNGESEGEFQYGNYRKEA-DDLHSVISHL---NQEKYDVKAIVGHSKGGDVVVLYAS 133
DFSGNG+SEG F YGN+ EA DDLH VI HL N V I+GHSKGGDVV+LYAS
Sbjct: 62 DFSGNGDSEGTFYYGNFNSEAEDDLHYVIQHLSSSNIMNRLVPVILGHSKGGDVVLLYAS 121
Query: 134 IYDD-VRTVVNLSGRFHLEKGIEERLGKEFMNIIDKEGYIDVKTNSGKVLYKVTKESLME 192
+ D +R VVN+SGRF L+ + RLG ++ I ++G+ID GK ++VT+ESLM+
Sbjct: 122 KFPDYIRNVVNISGRFDLKNDV--RLGDGYIEKIKEQGFID--ATEGKSCFRVTQESLMD 177
Query: 193 RLTTDMHKACLSISKECRFFTVHGSADEIIPVEDAYEFAKHIPNHKLHVIEGANHCYTAH 252
RL TDMH+ACL+I K+C+ TVHGS D ++P EDA EFAK IPNHKL ++EGANH YT H
Sbjct: 178 RLNTDMHQACLNIDKQCKVLTVHGSDDTVVPGEDAKEFAKVIPNHKLEIVEGANHGYTKH 237
Query: 253 RKELSDAVVDFITSS 267
+KEL V+F ++
Sbjct: 238 QKELVSIAVEFTKTA 252
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,947,072
Number of extensions: 259960
Number of successful extensions: 740
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 5
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)