BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0559600 Os01g0559600|AK067597
(501 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32940.1 | chr4:15900557-15903161 REVERSE LENGTH=495 667 0.0
AT2G25940.1 | chr2:11063496-11066020 REVERSE LENGTH=479 650 0.0
AT1G62710.1 | chr1:23224070-23226857 REVERSE LENGTH=487 567 e-162
AT3G20210.1 | chr3:7052482-7054525 FORWARD LENGTH=467 452 e-127
AT1G08750.1 | chr1:2801283-2804392 FORWARD LENGTH=389 102 4e-22
>AT4G32940.1 | chr4:15900557-15903161 REVERSE LENGTH=495
Length = 494
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/439 (73%), Positives = 377/439 (85%), Gaps = 3/439 (0%)
Query: 64 TRWAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVII 123
TRWAVL+AGS+GY+NYRHQAD+CHAYQ++++GGLK+ENI+VFMYDDIA+N ENPRPG II
Sbjct: 58 TRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTII 117
Query: 124 NHPQGGDVYAGVPKDYTGKEVNVKNLFAVLLGNKTAVKGGSGKVLDSGPNDHIFIFYSDH 183
N P G DVY GVPKDYTG +VNV NLFAV+LG+KTAVKGGSGKV+DSGPNDHIFIFYSDH
Sbjct: 118 NSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDH 177
Query: 184 GGPGVLGMPTYPYLYGDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFEGLLPNGINVYA 243
GGPGVLGMPT PYLY +DL DVLKKKHA GTYKSLVFYLEACESGSIFEGLLP G+N+YA
Sbjct: 178 GGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYA 237
Query: 244 TTASNADESSWGTYCPGEYPSPPPEYDTCLGDLYSVAWMEDSDVHNLRTESLKQQYNLVK 303
TTASNA+ESSWGTYCPGE PSPPPEY+TCLGDLYSVAWMEDS +HNL+TE+L QQY LVK
Sbjct: 238 TTASNAEESSWGTYCPGEEPSPPPEYETCLGDLYSVAWMEDSGMHNLQTETLHQQYELVK 297
Query: 304 ERTS-VQHTYYSGSHVMEYGSLELNAHHVFMYMGSNPANDNATFVEDNSLPSFSRAVNQR 362
RT+ V ++Y GSHVM+YG + ++ ++ +YMG+NPANDN TF + NSL SR NQR
Sbjct: 298 RRTAPVGYSY--GSHVMQYGDVGISKDNLDLYMGTNPANDNFTFADANSLKPPSRVTNQR 355
Query: 363 DADLVYFWQKYRKLPESSPEKNEARKQLLEMMAHRSHVDNSVELIGNLLFGSEEGPRVLK 422
DADLV+FW+KYRK PE S K EA+KQ+LE M+HR H+DNSV L+G +LFG GP VL
Sbjct: 356 DADLVHFWEKYRKAPEGSARKTEAQKQVLEAMSHRLHIDNSVILVGKILFGISRGPEVLN 415
Query: 423 AVRATGEPLVDDWSCLKSMVRTFEAQCGSLAQYGMKHMRSFANICNAGISAEAMAKVAAQ 482
VR+ G+PLVDDW+CLK+ VR FE CGSL+QYG+KHMRSFANICNAGI E M + A+Q
Sbjct: 416 KVRSAGQPLVDDWNCLKNQVRAFERHCGSLSQYGIKHMRSFANICNAGIQMEQMEEAASQ 475
Query: 483 ACTSIPSNPWSSTHRGFSA 501
ACT++P+ PWSS +RGFSA
Sbjct: 476 ACTTLPTGPWSSLNRGFSA 494
>AT2G25940.1 | chr2:11063496-11066020 REVERSE LENGTH=479
Length = 478
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/438 (70%), Positives = 365/438 (83%), Gaps = 2/438 (0%)
Query: 64 TRWAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVII 123
T+WAVL+AGS+GY+NYRHQADVCHAYQ++K+GG+K+ENI+VFMYDDIA N ENPRPGVII
Sbjct: 43 TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVII 102
Query: 124 NHPQGGDVYAGVPKDYTGKEVNVKNLFAVLLGNKTAVKGGSGKVLDSGPNDHIFIFYSDH 183
N P G DVY GVPKDYTG EVNV NL AV+LGNKTA+KGGSGKV+DSGPNDHIFI+YSDH
Sbjct: 103 NSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIYYSDH 162
Query: 184 GGPGVLGMPTYPYLYGDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFEGLLPNGINVYA 243
GGPGVLGMPT P LY +DL DVLKKK+A+GTYKSLVFYLEACESGSIFEGLLP G+N+YA
Sbjct: 163 GGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIFEGLLPEGLNIYA 222
Query: 244 TTASNADESSWGTYCPGEYPSPPPEYDTCLGDLYSVAWMEDSDVHNLRTESLKQQYNLVK 303
TTASNA+ESSWGTYCPGE PSPP EY+TCLGDLYSVAW+EDS+ HNL+TE+L +QY LVK
Sbjct: 223 TTASNAEESSWGTYCPGEDPSPPSEYETCLGDLYSVAWIEDSEKHNLQTETLHEQYELVK 282
Query: 304 ERTSVQHTYYSGSHVMEYGSLELNAHHVFMYMGSNPANDNATFVEDNSLPSFSRAVNQRD 363
+RT+ Y GSHVME+G + L+ + ++MG+NPA++N TFV +NS+ SR NQRD
Sbjct: 283 KRTAGSGKSY-GSHVMEFGDIGLSKEKLVLFMGTNPADENFTFVNENSIRPPSRVTNQRD 341
Query: 364 ADLVYFWQKYRKLPESSPEKNEARKQLLEMMAHRSHVDNSVELIGNLLFGSEEGPRVLKA 423
ADLV+FW KY+K PE S K EA+KQ+LE M+HR HVDNS+ LI +L EG VL
Sbjct: 342 ADLVHFWHKYQKAPEGSARKVEAQKQVLEAMSHRLHVDNSILLI-GILLFGLEGHAVLNK 400
Query: 424 VRATGEPLVDDWSCLKSMVRTFEAQCGSLAQYGMKHMRSFANICNAGISAEAMAKVAAQA 483
VR +GEPLVDDW CLKS+VR FE CGSL+QYG+KHMRS AN+CNAGI M + A QA
Sbjct: 401 VRPSGEPLVDDWDCLKSLVRAFERHCGSLSQYGIKHMRSIANMCNAGIQMRQMEEAAMQA 460
Query: 484 CTSIPSNPWSSTHRGFSA 501
C +IP++PWSS RGFSA
Sbjct: 461 CPTIPTSPWSSLDRGFSA 478
>AT1G62710.1 | chr1:23224070-23226857 REVERSE LENGTH=487
Length = 486
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/423 (62%), Positives = 322/423 (76%), Gaps = 7/423 (1%)
Query: 64 TRWAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVII 123
TRWAVL+AGS+GY NYRHQADVCHAYQI+++GGLK+ENI+V MYDDIA++P NPRPG +I
Sbjct: 50 TRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLI 109
Query: 124 NHPQGGDVYAGVPKDYTGKEVNVKNLFAVLLGNKTAVKGGSGKVLDSGPNDHIFIFYSDH 183
NHP G DVYAGVPKDYTG V N +AVLLG++ AVKGGSGKV+ S PNDHIF++Y+DH
Sbjct: 110 NHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYADH 169
Query: 184 GGPGVLGMPTYPYLYGDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFEGLLPNGINVYA 243
GGPGVLGMP P++Y D ++ LKKKHA+GTYK +V Y+EACESGSIFEG++P +N+Y
Sbjct: 170 GGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMPKDLNIYV 229
Query: 244 TTASNADESSWGTYCPGEYPSPPPEYDTCLGDLYSVAWMEDSDVHNLRTESLKQQYNLVK 303
TTASNA ESS+GTYCPG PSPP EY TCLGDLYSVAWMEDS+ HNL+ E++KQQY+ VK
Sbjct: 230 TTASNAQESSYGTYCPGMNPSPPSEYITCLGDLYSVAWMEDSETHNLKKETIKQQYHTVK 289
Query: 304 ERTSVQHTYYSGSHVMEYGSLELNAHHVFMYMGSNPANDNATFVEDNSLPSFSR--AVNQ 361
RTS +TY GSHVMEYG+ + + +++Y G +PA N N LP S+ VNQ
Sbjct: 290 MRTSNYNTYSGGSHVMEYGNNSIKSEKLYLYQGFDPATVNLPL---NELPVKSKIGVVNQ 346
Query: 362 RDADLVYFWQKYRKLPESSPEKNEARKQLLEMMAHRSHVDNSVELIGNLLFGSEEGPRVL 421
RDADL++ W YR + S +K++ K+L E HR H+D SVELI +LFG VL
Sbjct: 347 RDADLLFLWHMYRTSEDGSRKKDDTLKELTETTRHRKHLDASVELIATILFGPTM--NVL 404
Query: 422 KAVRATGEPLVDDWSCLKSMVRTFEAQCGSLAQYGMKHMRSFANICNAGISAEAMAKVAA 481
VR G PLVDDW CLKSMVR FE CGSL QYGMKHMR+FAN+CN G+S E M + +
Sbjct: 405 NLVREPGLPLVDDWECLKSMVRVFEEHCGSLTQYGMKHMRAFANVCNNGVSKELMEEAST 464
Query: 482 QAC 484
AC
Sbjct: 465 AAC 467
>AT3G20210.1 | chr3:7052482-7054525 FORWARD LENGTH=467
Length = 466
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/423 (52%), Positives = 292/423 (69%), Gaps = 3/423 (0%)
Query: 64 TRWAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVII 123
TRWAVL+AGSN YYNYRHQAD+CHAYQI+++GGLKDENIIVFMYDDIA + ENPRPGVII
Sbjct: 45 TRWAVLVAGSNEYYNYRHQADICHAYQILRKGGLKDENIIVFMYDDIAFSSENPRPGVII 104
Query: 124 NHPQGGDVYAGVPKDYTGKEVNVKNLFAVLLGNKTAVKGGSGKVLDSGPNDHIFIFYSDH 183
N P G DVY GVPKDYT + VNV+N + VLLGN++ V GG+GKV+ SGPND+IFI+Y+DH
Sbjct: 105 NKPDGEDVYKGVPKDYTKEAVNVQNFYNVLLGNESGVTGGNGKVVKSGPNDNIFIYYADH 164
Query: 184 GGPGVLGMPTYPYLYGDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFEGLLPNGINVYA 243
G PG++ MPT + D +VL+K H Y +V Y+EACESGS+FEG+L +N+YA
Sbjct: 165 GAPGLIAMPTGDEVMAKDFNEVLEKMHKRKKYNKMVIYVEACESGSMFEGILKKNLNIYA 224
Query: 244 TTASNADESSWGTYCPGEYPSPPPEYDTCLGDLYSVAWMEDSDVHNLRTESLKQQYNLVK 303
TA+N+ ESSWG YCP YP PP E TCLGD +S++W+EDSD+H++ E+L+QQY++VK
Sbjct: 225 VTAANSKESSWGVYCPESYPPPPSEIGTCLGDTFSISWLEDSDLHDMSKETLEQQYHVVK 284
Query: 304 ERTSVQHTYYSGSHVMEYGSLELNAHHVFMYMGSNPANDNATFVEDNSLP-SFSRAVNQR 362
R V SHV +G+ ++ ++ Y+G NP NDN TF E S P S S VN R
Sbjct: 285 RR--VGSDVPETSHVCRFGTEKMLKDYLSSYIGRNPENDNFTFTESFSSPISNSGLVNPR 342
Query: 363 DADLVYFWQKYRKLPESSPEKNEARKQLLEMMAHRSHVDNSVELIGNLLFGSEEGPRVLK 422
D L+Y +K +K P S E EA+K+LL+ HR +D S+ I L +L
Sbjct: 343 DIPLLYLQRKIQKAPMGSLESKEAQKKLLDEKNHRKQIDQSITDILRLSVKQTNVLNLLT 402
Query: 423 AVRATGEPLVDDWSCLKSMVRTFEAQCGSLAQYGMKHMRSFANICNAGISAEAMAKVAAQ 482
+ R TG+PLVDDW C K++V +F+ CG+ YG+K+ + ANICN G+ + Q
Sbjct: 403 STRTTGQPLVDDWDCFKTLVNSFKNHCGATVHYGLKYTGALANICNMGVDVKQTVSAIEQ 462
Query: 483 ACT 485
AC+
Sbjct: 463 ACS 465
>AT1G08750.1 | chr1:2801283-2804392 FORWARD LENGTH=389
Length = 388
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 66 WAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVIINH 125
WAVL+ S ++NYRH A+ Y+ +KR G+ DE II+ + DD+A N N P + N+
Sbjct: 28 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNEYPAQVFNN 87
Query: 126 PQGG-DVYA-GVPKDYTGKEVNVKNLFAVLLGNKTAVKGGSGKVLDSGPNDHIFIFYSDH 183
++Y V DY G EV V+N VL G S ++L S HI ++ + H
Sbjct: 88 ENHKLNLYGDNVEVDYRGYEVTVENFLRVLTGRHENAVPRSKRLL-SDEGSHILLYMTGH 146
Query: 184 GGPGVLGMPTYPYLYGDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFEGLLPNGI 239
GG L L DL D +K+ +K L+ ++ C++ ++F L G+
Sbjct: 147 GGDEFLKFQDAEELQSHDLADAVKQMKEKRRFKELMIMVDTCQAATLFNQLQSPGV 202
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,146,181
Number of extensions: 509714
Number of successful extensions: 1248
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 5
Length of query: 501
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 398
Effective length of database: 8,282,721
Effective search space: 3296522958
Effective search space used: 3296522958
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)