BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0558300 Os01g0558300|AK065132
         (247 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51730.1  | chr1:19186812-19188638 REVERSE LENGTH=253          296   9e-81

>AT1G51730.1 | chr1:19186812-19188638 REVERSE LENGTH=253
          Length = 252

 Score =  296 bits (757), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 151/249 (60%), Positives = 181/249 (72%), Gaps = 5/249 (2%)

Query: 1   MADYEQEQEMEVEALQAILMDDIKEIDPSESGLSTTARCFQIVLSPQDDDFDESAYVPVQ 60
           M +Y+QEQEME+EAL+AILMD+ KEI  SESGL+T+ RCFQI ++PQDD+ +E A  PVQ
Sbjct: 1   MTEYKQEQEMEIEALEAILMDEFKEIHSSESGLNTSNRCFQITVTPQDDELEELAIPPVQ 60

Query: 61  LALIFAHTEKYPDEPPLLNVKSVRGMKSEDLASLKEKLEQEATENLGMAMVYTLVTSAQD 120
           LAL+F+HTE YPDE PLL+VKS+RG+   DL  LKEKLEQEA+ENLGMAM+YTLV+SA+D
Sbjct: 61  LALVFSHTENYPDEAPLLDVKSIRGIHVSDLTILKEKLEQEASENLGMAMIYTLVSSAKD 120

Query: 121 WLSEKYGQNAGDGXXXXXXXXXXXVIVPHGEAVTVESFLAWRDRFEAELALQRAKLMPES 180
           WLSE YGQ+               VIVPHGE VT+E+FLAWR+R+EAELAL+RAKLMPES
Sbjct: 121 WLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEAELALERAKLMPES 180

Query: 181 ALTAPKEKKLSGRQYFESGRHTMKGASTTAXXXXXXXXXXXXXXXXXXXXXX---MLEHY 237
           ALTAPKEKKL+GRQ+FESGR   +G    A                         MLEHY
Sbjct: 181 ALTAPKEKKLTGRQWFESGRG--RGTVVIADEEDEEEDEEDIDFEDEDFEDDEEDMLEHY 238

Query: 238 LAEQSGKSA 246
           LAE+S  SA
Sbjct: 239 LAEKSDSSA 247



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,341,994
Number of extensions: 151645
Number of successful extensions: 329
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)