BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0558200 Os01g0558200|AK120139
(640 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51720.1 | chr1:19181741-19186297 FORWARD LENGTH=638 862 0.0
AT5G18170.1 | chr5:6006172-6008248 FORWARD LENGTH=412 137 1e-32
AT3G03910.1 | chr3:1006913-1008846 FORWARD LENGTH=412 136 4e-32
AT5G07440.1 | chr5:2356153-2358012 FORWARD LENGTH=412 132 7e-31
>AT1G51720.1 | chr1:19181741-19186297 FORWARD LENGTH=638
Length = 637
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/650 (62%), Positives = 509/650 (78%), Gaps = 36/650 (5%)
Query: 1 MDELNLLRXXXXXXXXXLVVRGLGEEIDLEIGPG-DDPSFPGAALVGVTP-----GAHDP 54
MD++NL++ LVV LGEEIDLEIGPG DD +F +L+G P G HD
Sbjct: 14 MDDMNLIQQAQRHQ---LVVSNLGEEIDLEIGPGEDDAAFANNSLIGGPPREPSTGEHDE 70
Query: 55 ADDHKSLL--IPC-SQPVAEGQPQPTPPQVEEHDGLLRLPGQTXXXXXXXXXWREEWADT 111
H L+ +P Q +++G P WREEWADT
Sbjct: 71 TK-HMVLVSDLPSEDQDISKGTP-------------------AKRKKKVVKRWREEWADT 110
Query: 112 YKWAYVAVHDNTSRIFCTVCKEYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRL 171
YKWAYV + D T+RIFC++C+EYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRL
Sbjct: 111 YKWAYVDMKDGTARIFCSICREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRL 170
Query: 172 QTASKENAQPPEIERPVYVKA-LSKTAASILESILKKDPHEAEFIQSIQEVVHSLEPVLV 230
QTASK+ +++P+YVK +SK+A SI+E LK+DP+E EF+QS+QE VH+LE V+
Sbjct: 171 QTASKDKIV---VDKPIYVKTVMSKSAGSIVEGALKRDPNEIEFVQSVQESVHALERVIA 227
Query: 231 KNSQHVQILERLLEPERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGPCRGGLRFHPSMT 290
KNS +V I+ERLLEPER +FRVPW+DDRGE HVNRGFRVQF+QALGPCRGG+RFHPSM
Sbjct: 228 KNSHYVNIMERLLEPERMIVFRVPWIDDRGETHVNRGFRVQFNQALGPCRGGIRFHPSMN 287
Query: 291 LSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQSFMDELYRYLGPDQ 350
LS+AKFL F+QTLKNALS YKLGGA+GGSDFDPKGKS++EIMRFCQSFM+E+YRY+GPD+
Sbjct: 288 LSIAKFLGFQQTLKNALSPYKLGGASGGSDFDPKGKSDNEIMRFCQSFMNEMYRYMGPDK 347
Query: 351 DFPAEDVGVGPREMGYLFGQYRRLSGHFQGNFTGPKIFWSGSSFRTEATGYGLVFFARVV 410
D P+E+VGVG REMGYLFGQYRRL+G FQG+FTGP+I+W+ SS RTEA+GYG+V+FAR++
Sbjct: 348 DLPSEEVGVGTREMGYLFGQYRRLAGQFQGSFTGPRIYWAASSLRTEASGYGVVYFARLI 407
Query: 411 LADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIPVTVSDSKGYLLDTEGFDYMKYSVL 470
LADMNKE+KGLRCV+SG GKIAMHV+EKL++C A PVTVSDSKGYL+D +GFDYMK + L
Sbjct: 408 LADMNKEIKGLRCVVSGCGKIAMHVVEKLIACGAHPVTVSDSKGYLVDDDGFDYMKLAFL 467
Query: 471 RNIKAQQRSLKEYLKSYPNAKYIDDAKPWSEKCDVAFPCASQNEIDQAEALAIINSGCRV 530
R+IK+QQRSL++Y K+Y AKY D+ KPW+E+CDVAFPCASQNE+DQA+A+ ++N+GCR+
Sbjct: 468 RDIKSQQRSLRDYSKTYARAKYFDELKPWNERCDVAFPCASQNEVDQADAINLVNAGCRL 527
Query: 531 LIECSNMPCTAQAVDILRXXXXXXXXXXXXXXXXXXXXELELNPEFSLMQWSVEDFENKI 590
L+E SNMPCTA+AVD+ R E+E+ E + MQWS EDFE+++
Sbjct: 528 LVEGSNMPCTAEAVDVFRKANVLIAPAIAAGAGGVAAGEIEVLRESNSMQWSAEDFESRL 587
Query: 591 QDAVKQTYDRSIKAAQDYGIMKENPESLVHGANICAFLNIAQAMTDQGCV 640
Q+A+KQTY++++KAA D+G KE+PE+L+HGA I AFLNIAQAMTDQGCV
Sbjct: 588 QEALKQTYEKALKAANDFGYQKESPEALLHGATIAAFLNIAQAMTDQGCV 637
>AT5G18170.1 | chr5:6006172-6008248 FORWARD LENGTH=412
Length = 411
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 157/374 (41%), Gaps = 20/374 (5%)
Query: 267 GFRVQFSQALGPCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGK 326
GFRVQ A GP +GG+R+HP + LA T K A+++ GGA GG DP
Sbjct: 53 GFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKL 112
Query: 327 SESEIMRFCQSFMDELYRYLGPDQDFPAEDVGVGPREMGYLFGQYRRLSGHFQGNFTGPK 386
S SE+ R + F +++ +G D PA D+G GP+ M ++ +Y + G+ TG
Sbjct: 113 SISELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKP 172
Query: 387 IFWSGSSFRTEATGYGLVFFARVVLADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIP 446
I GS R ATG G++F +L + K + G R VI G G + + +
Sbjct: 173 IDLGGSLGRDAATGRGVMFGTEALLNEHGKTISGQRFVIQGFGNVGSWAAKLISEKGGKI 232
Query: 447 VTVSDSKGYLLDTEGFDYMKYSVLRNIKAQQRSLKEY--LKSYPNAKYIDDAKPWSEKCD 504
V VSD G + + +G D I A + KE+ +K + A ID E CD
Sbjct: 233 VAVSDITGAIKNKDGID---------IPALLKHTKEHRGVKGFDGADPIDPNSILVEDCD 283
Query: 505 VAFPCASQNEIDQAEALAIINSGCRVLIECSNMPCTAQAVDILRXXXXXXXXXXXXXXXX 564
+ P A I++ A I + +IE +N P A +IL
Sbjct: 284 ILVPAALGGVINRENANEI---KAKFIIEAANHPTDPDADEILSKKGVVILPDIYANSGG 340
Query: 565 XXXXELELNPEFSLMQWSVEDFENKIQDAVKQTYDRSIKAAQDYGIMKENPESLVHGANI 624
E W E K+ D +K RS K ++ + K + L GA
Sbjct: 341 VTVSYFEWVQNIQGFMWE----EEKVNDELKTYMTRSFKDLKE--MCKTHSCDLRMGAFT 394
Query: 625 CAFLNIAQAMTDQG 638
+AQA +G
Sbjct: 395 LGVNRVAQATILRG 408
>AT3G03910.1 | chr3:1006913-1008846 FORWARD LENGTH=412
Length = 411
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 10/282 (3%)
Query: 267 GFRVQFSQALGPCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGK 326
GFRVQ A GP +GG+R+HP + LA T K A+++ GGA GG DP
Sbjct: 53 GFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSEL 112
Query: 327 SESEIMRFCQSFMDELYRYLGPDQDFPAEDVGVGPREMGYLFGQYRRLSGHFQGNFTGPK 386
S SE+ R + F +++ +G D PA D+G GP+ M ++ +Y + GH TG
Sbjct: 113 SLSELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKP 172
Query: 387 IFWSGSSFRTEATGYGLVFFARVVLADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIP 446
I GS R ATG G++F +L + K + G R I G G + + +
Sbjct: 173 IDLGGSLGRDAATGRGVLFATEALLNEHGKTISGQRFAIQGFGNVGSWAAKLISDKGGKI 232
Query: 447 VTVSDSKGYLLDTEGFDYMKYSVLRNIKAQQRSLKEYLKSYPNAKYIDDAKPWSEKCDVA 506
V VSD G + + G D + S+L + + + +K + A ID E CD+
Sbjct: 233 VAVSDVTGAIKNNNGIDIL--SLLEHAEENRG-----IKGFDGADSIDPDSILVEDCDIL 285
Query: 507 FPCASQNEIDQAEALAIINSGCRVLIECSNMPCTAQAVDILR 548
P A I++ A I + +IE +N P +A +IL+
Sbjct: 286 VPAALGGVINRENANEI---KAKFIIEGANHPTDPEADEILK 324
>AT5G07440.1 | chr5:2356153-2358012 FORWARD LENGTH=412
Length = 411
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 10/281 (3%)
Query: 267 GFRVQFSQALGPCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGK 326
GFRVQ A GP +GG+R+HP + LA T K A++ GGA GG P+
Sbjct: 53 GFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDL 112
Query: 327 SESEIMRFCQSFMDELYRYLGPDQDFPAEDVGVGPREMGYLFGQYRRLSGHFQGNFTGPK 386
S SE+ R + F +++ +G D PA D+G + M ++ +Y + GH TG
Sbjct: 113 SLSELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKP 172
Query: 387 IFWSGSSFRTEATGYGLVFFARVVLADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIP 446
I GS R ATG G+VF +LA+ K ++GL VI G G + + +
Sbjct: 173 IDLGGSLGREAATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIHEKGGKV 232
Query: 447 VTVSDSKGYLLDTEGFDYMKYSVLRNIKAQQRSLKEYLKSYPNAKYIDDAKPWSEKCDVA 506
V VSD G + + EG D N + + L + ++ + +CDV
Sbjct: 233 VAVSDITGAIRNPEGIDI-------NALIKHKDATGSLNDFNGGDAMNSDELLIHECDVL 285
Query: 507 FPCASQNEIDQAEALAIINSGCRVLIECSNMPCTAQAVDIL 547
PCA +++ A + + ++E +N P A +IL
Sbjct: 286 IPCALGGVLNKENAGDV---KAKFIVEAANHPTDPDADEIL 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,700,512
Number of extensions: 580206
Number of successful extensions: 1457
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1452
Number of HSP's successfully gapped: 4
Length of query: 640
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 535
Effective length of database: 8,227,889
Effective search space: 4401920615
Effective search space used: 4401920615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)