BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0555300 Os01g0555300|AK068308
         (242 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11280.1  | chr5:3597321-3598347 FORWARD LENGTH=210            242   2e-64
AT1G80200.1  | chr1:30162034-30162999 FORWARD LENGTH=235          118   4e-27

>AT5G11280.1 | chr5:3597321-3598347 FORWARD LENGTH=210
          Length = 209

 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 144/176 (81%)

Query: 67  RVPCRAGTCTTPIQVTSSQLVSNEIFPPSVVKALLFPGAIASNLTKSMTFPRWNDLFDIY 126
           RVPCR+G C++PI VTSSQL+S+EIFP  ++KALL+PGA+ + L  +MTFP+W ++ DIY
Sbjct: 34  RVPCRSGMCSSPIHVTSSQLISSEIFPVPMIKALLYPGAVVNGLAINMTFPKWENVLDIY 93

Query: 127 NLTEAKTASAVIDLQRLEILAGSYFCAAGALVGVINPGRMTLFGTLLVIWGLVKEALFGK 186
           NLT  K ASAV DLQRLE+LAGSYF  AGA VG++ PGRM++FG+LL++WGLVKE + GK
Sbjct: 94  NLTNVKEASAVTDLQRLEVLAGSYFSVAGAFVGLLKPGRMSMFGSLLLVWGLVKEGILGK 153

Query: 187 PVNSDPTQSVHVYPTILIALICAFLSITYNVKKTVRNSQSVSITKPLQSSAKSKLK 242
           PVN+DP ++V+VYPT+++A+ICAF  I Y+++K  R + +  I KPL SS+KSKLK
Sbjct: 154 PVNTDPAKTVYVYPTMVLAMICAFSMIKYDLRKATRAAPARPIAKPLMSSSKSKLK 209



>AT1G80200.1 | chr1:30162034-30162999 FORWARD LENGTH=235
          Length = 234

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 68  VPCRAGTCTTPIQVTSSQLVSNEIFPPSVVKALLFPGAIASNLTKSMTFPRWNDLFDIYN 127
           V CR  +C TP++V SS+L++ ++ P S+VK LL+PGAI  +L      P ++ LF  Y+
Sbjct: 62  VACRNKSCETPLEVISSELIATDLIPSSLVKTLLYPGAITKSLFAGSKIPSYHHLFQFYS 121

Query: 128 LTEA-KTASAVIDLQRLEILAGSYFCAAGALVGVINPGRMTLFGTLLVIWGLVKEALFGK 186
                +T+S   D+  LE+ AGS  C  GAL+ +  P R+T  GTLL+ WGL+++ L   
Sbjct: 122 FDGMYRTSSFATDIHHLEVFAGSCLCLLGALLNLFKPTRITFIGTLLISWGLIRDILLLD 181

Query: 187 PVN---SDPTQSVHVYPTILIALICAFLSITYNVKKTVRNSQSVSITK 231
             +   S    SV VYPT+ +A + AFLS+  +V+K +R   S++++K
Sbjct: 182 SAHDWISPHRNSVRVYPTLFLASLSAFLSMRSDVRKIIRCCTSITLSK 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,700,300
Number of extensions: 125529
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 2
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)