BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0551900 Os01g0551900|AK105617
(555 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46560.1 | chr2:19115570-19125856 REVERSE LENGTH=2514 600 e-172
>AT2G46560.1 | chr2:19115570-19125856 REVERSE LENGTH=2514
Length = 2513
Score = 600 bits (1546), Expect = e-172, Method: Compositional matrix adjust.
Identities = 285/491 (58%), Positives = 362/491 (73%), Gaps = 25/491 (5%)
Query: 75 FERPRELVRRNGELLEAICLNSINEQQGAIATNRKGLVFFNWNDKQDNKNLAEYIWAGSD 134
F+ P+E+ +R GEL+EA+C+N+IN +Q A+A+NRKG++FFN D ++N ++YIW+ +D
Sbjct: 2036 FQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSDAD 2095
Query: 135 WPLDGWAGCEXXXXXXXXXXXVGLGRRKGSHLSSGGPTISLGSLAKPGRD---------- 184
WP +GWA E VGLG +KG+HL GG T+ + SL+KPG+
Sbjct: 2096 WPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKADRVPGYSGLG 2155
Query: 185 -LTXXXXXXXXXXXXXXXSGFGWGEPDEFEDFVDPPATLENIHSRALSRHPSLPLLLVGS 243
+ SG GW +EFE+FVDPP T+E++ +RA S HP++PL LVGS
Sbjct: 2156 AIADPGSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGS 2215
Query: 244 SNTHVYLWEFGKDSAMATYGVLPAANIPPPYALASISAVQFDYYGQRFATAALDGTVCTW 303
SNTH+YLWEFG + A ATYGVLPAAN+ PPYALASISAVQF +G RFA+AALDGTVCTW
Sbjct: 2216 SNTHIYLWEFGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTW 2275
Query: 304 QVEVGGRSNVHPTESSLCFNTHASDVAFLTASGSVLAAAGCSSNGANVVIWDTLAPPSTC 363
Q EVGGRSN+HP ESSLCFN HASDV ++++SGS++AA+G SS+GANVV+WDTLAPPST
Sbjct: 2276 QSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTS 2335
Query: 364 QTSIMCHEGGVRSLSVFDRNIGCGSISPLIVTGGKSGDVTLHDFRFISTGKTKHHRSSNE 423
Q SI CHEGG RS+SVFD +IG GSISP+IVTGGK+GDV LHDFRFI+TGK K R+
Sbjct: 2336 QASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNP-- 2393
Query: 424 HDVKASSTSMHDTKSGTSNGVSNSGMIWHIPKAHTGSVSSVSTIPNTSLFLTGSKDGDVK 483
D S T + +GM+W+IPKAH GSV+ ++TIP TSLFLTGSKDG+VK
Sbjct: 2394 -----------DGGSSTDGDQNKNGMLWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVK 2442
Query: 484 LWDAKSSQLVFHWQKLHERHTFFQPTSRGFGGVVRAAVTDIQVLPNGFVSCGGDGSVKLV 543
LWDAK+++L+ HW KLHERHTF QP SRG+GG++RA VTDIQV PNGF++CGGDG+VK V
Sbjct: 2443 LWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFV 2502
Query: 544 Q-VKNDFADVR 553
V + + D +
Sbjct: 2503 SLVDSSYGDAK 2513
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,462,384
Number of extensions: 521078
Number of successful extensions: 2118
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 451
Effective length of database: 8,255,305
Effective search space: 3723142555
Effective search space used: 3723142555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)