BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0551100 Os01g0551100|AK067932
(256 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20420.1 | chr3:7119371-7120895 REVERSE LENGTH=392 72 2e-13
AT1G01040.2 | chr1:23519-31079 FORWARD LENGTH=1911 56 1e-08
AT3G43920.2 | chr3:15753548-15760830 FORWARD LENGTH=1581 50 1e-06
AT4G15417.1 | chr4:8821759-8822991 FORWARD LENGTH=265 49 2e-06
>AT3G20420.1 | chr3:7119371-7120895 REVERSE LENGTH=392
Length = 391
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 30 GYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRXXXXXXXXXXXXXXTIFYRDDPGLDQ 89
Y F + LL++A+TH+ ++R Y P L+
Sbjct: 68 NYKFSNKS--LLKEAITHT-----SCTDFPSYERLEFIGDSAIGLAISNYLYLTYPSLEP 120
Query: 90 GDLTVLRSANVSTQKXXXXXXXXXXXXXXXXXNCAPQDHEVSRFTKSV--EGPYS---GD 144
DL++LR+ANVST+K N D +V F+++V E S G
Sbjct: 121 HDLSLLRAANVSTEKLARVSLNHGLYSFLRR-NAPSLDEKVKEFSEAVGKEDDLSVSYGG 179
Query: 145 PIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPE--SMLNEL 202
++ P+VLAD+ E++ GAVY+D DL+ L + + L EPI+T L + P+ SML +L
Sbjct: 180 LVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKL 239
Query: 203 GGEHREDLEIKILAWR 218
+H++ ++IK W+
Sbjct: 240 CHKHKKRIDIK--NWK 253
>AT1G01040.2 | chr1:23519-31079 FORWARD LENGTH=1911
Length = 1910
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 31 YSFRDGGALLLEDALTHSVHPRDEAGGRARHQRXXXXXXXXXXXXXXTIFYRDDPGLDQG 90
Y F++ G LL +A+TH+ P + G + +QR + L G
Sbjct: 1569 YEFKEKG--LLVEAITHASRP---SSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1623
Query: 91 DLTVLRSANVSTQKXXXXXXXXXXXXXXXXXNCAPQDHEVSRFTKSVEGPYS-------- 142
LT LR+A V+ + + A + ++ F K V+ S
Sbjct: 1624 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSA-LEKQIREFVKEVQTESSKPGFNSFG 1682
Query: 143 -GDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNE 201
GD + P+VL DIVE+I GA++LDS D KV + L +P++T + L P L E
Sbjct: 1683 LGD-CKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQE 1741
Query: 202 LGGEHREDLEIK 213
+ E LE K
Sbjct: 1742 RCQQQAEGLEYK 1753
>AT3G43920.2 | chr3:15753548-15760830 FORWARD LENGTH=1581
Length = 1580
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 133 FTKSVEGPYSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALL 192
F K E S I+GP+ L D+VE+I GA+ +D++LDL+ + +V + L P++T L
Sbjct: 1305 FQKPDETGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQ 1364
Query: 193 EDPESMLNEL 202
P LNEL
Sbjct: 1365 LPPYRELNEL 1374
>AT4G15417.1 | chr4:8821759-8822991 FORWARD LENGTH=265
Length = 264
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 80 FYRDDPGLDQGDLTVLRSANVSTQKXXXXXXXXXXXXXXXXXNCAPQDHEVSRFTKSVEG 139
F + P G LT LR+ NV T+K ++ ++ F +++E
Sbjct: 82 FIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEE-QILEFVEAMEK 140
Query: 140 P--YSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPES 197
+S ++ P+VLADIVE+ +GA+++D E + KV K L EPII + P +
Sbjct: 141 YPLHSNGLLKVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMKSHPMT 199
Query: 198 MLNEL 202
LNE+
Sbjct: 200 ELNEM 204
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,475,671
Number of extensions: 154084
Number of successful extensions: 289
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 4
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)