BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0534800 Os01g0534800|AK072168
(569 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15420.1 | chr4:8823822-8825949 FORWARD LENGTH=562 660 0.0
AT2G21270.3 | chr2:9107841-9110012 FORWARD LENGTH=341 113 3e-25
AT4G38930.2 | chr4:18149907-18151616 FORWARD LENGTH=316 113 3e-25
AT2G29070.2 | chr2:12487797-12489335 FORWARD LENGTH=313 110 2e-24
AT1G09920.1 | chr1:3224863-3226860 REVERSE LENGTH=193 57 4e-08
>AT4G15420.1 | chr4:8823822-8825949 FORWARD LENGTH=562
Length = 561
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/524 (60%), Positives = 390/524 (74%), Gaps = 11/524 (2%)
Query: 47 SHRERRLDAARAQEEAQQKMEEVMQLGKGISFLHMFEALRYDGPGDKIKLPPSSFKELSD 106
+ R RRLDA AQ +A Q M+E + G GI F +F+A+ + G GDKIKLPPS F ELSD
Sbjct: 47 AQRARRLDAIEAQIKADQHMQESLVSGDGIVFERVFQAVSFQGNGDKIKLPPSCFTELSD 106
Query: 107 EGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTAREGSAELTPHVWNNLFRG 166
+GA DKGP+YF LS V + D + T GVLEFTA +G+ L PHVW+NLF
Sbjct: 107 QGAFDKGPLYFELSVVDHA--------DNKKTTHSGVLEFTAEDGTIGLPPHVWSNLFST 158
Query: 167 DSP-DVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLETALRNHATLSENDFVVVN 225
P DVPL+E+RY+ LPKG+YAKL+P+ +GFSDLPNH+A+LET LR HATLS +D ++VN
Sbjct: 159 HDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLDDVLLVN 218
Query: 226 YGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLDNVENQHVLVPLETGKVESGVVE 285
YGQ+ YKL+VLEL+PA+S+SVLETD+EVDI PD V D NQHVL PL+ GK ESG VE
Sbjct: 219 YGQVSYKLQVLELRPATSISVLETDIEVDIVSPDIVSDQ-PNQHVLKPLQYGKSESGTVE 277
Query: 286 EGKFRYYKFLVDEGMGEKVASRHANIEVKIETYTSGGDTDIYVSRHPLVFPTQHRHEWSS 345
EG++ YYKF++DE EKV + + VK++ G DTD+YVS+HP++FP+ ++HEWSS
Sbjct: 278 EGRYDYYKFVIDEATVEKVMAGSVKVIVKVDVEKVGADTDLYVSKHPVLFPSLNQHEWSS 337
Query: 346 HEMGSKVLILKPRDASLSSGTYSIGVYGFKGTTKYQLSVAIKDVLNGQRIGEQXXXXXXX 405
H++GSK LIL ++ +LSSGTYSIGVYGFKGT KYQ+SV +++ ++G ++GE+
Sbjct: 338 HDVGSKTLILVSKERALSSGTYSIGVYGFKGTVKYQVSVLVQESIDGAKVGERAVSSSSD 397
Query: 406 XXXXXXCKNCKRYISNRTSLLHEAYCVRHNVVCMHDGCGVVLRKEEATDHVHCNKCGQAF 465
C+NCK I +R+ LHE YC RHNVVC H GCG+VLR EEA +H+HC KCG+A
Sbjct: 398 VDTVE-CRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGKAL 456
Query: 466 QQREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSSTCPLRLIVCRFCGDTVQAGGEPLDA 525
Q EMEKH+KVFHEPL C CG+VLEKE MVQHQ CPLRLI CRFCGD V+AG D
Sbjct: 457 QPTEMEKHLKVFHEPLTCGCGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSAADT 516
Query: 526 RDRLRNMCEHESICGSRTAPCDSCGRSVMLKDMDIHVIAVHQKS 569
RDR+R M EHES CGSRTAPCDSCGRSVMLKDMDIH IAVH KS
Sbjct: 517 RDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQIAVHGKS 560
>AT2G21270.3 | chr2:9107841-9110012 FORWARD LENGTH=341
Length = 340
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 30/222 (13%)
Query: 91 GDKIKLPPSSFKELSDEGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTARE 150
GDKI +PPS+ L+ +D PM F L ++ + T CGVLEF A E
Sbjct: 54 GDKIIMPPSALDRLASL-HIDY-PMLFEL-----------RNAGIERVTHCGVLEFIAEE 100
Query: 151 GSAELTPHVWNNLF--RGDSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLET 208
G + + NL GD ++ VR V+LPKGTY KL+P F D+ N +A+LET
Sbjct: 101 GMIYMPYWMMQNLLLQEGD-----IVRVRNVTLPKGTYVKLQPHTTDFLDISNPKAILET 155
Query: 209 ALRNHATLSENDFVVVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLDNVENQ 268
ALRN++ L+ D ++V Y +Y + ++E KPA+++S++ETD EVD P LD E +
Sbjct: 156 ALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFAPP---LDYKEPE 212
Query: 269 HVLVPLET---GKVESGVVEEGKFRYYKFLVDEGMGEKVASR 307
P K E VV+E + ++ F G G ++ R
Sbjct: 213 RPTAPSAAKGPAKAEE-VVDEPEPKFNPF---TGSGRRLDGR 250
>AT4G38930.2 | chr4:18149907-18151616 FORWARD LENGTH=316
Length = 315
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 35/269 (13%)
Query: 91 GDKIKLPPSSFKELSDEGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTARE 150
GDKI +PPS+ L+ +D PM F L ++ D + CGVLEF A E
Sbjct: 33 GDKIIMPPSALDRLASL-QIDY-PMLFEL-----------RNASTDSFSHCGVLEFIAEE 79
Query: 151 GSAELTPHVWNNLF--RGDSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLET 208
G + + NL GD ++ VR V+LPKGTY KL+P F D+ N +A+LET
Sbjct: 80 GVIYIPYWMMQNLLLQEGD-----MVRVRNVTLPKGTYVKLQPHTTDFLDIANPKAILET 134
Query: 209 ALRNHATLSENDFVVVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLDNVENQ 268
ALRN++ L+ D ++V Y +Y + ++E KP++ +S++ETD EVD P LD E +
Sbjct: 135 ALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPP---LDYKEPE 191
Query: 269 HVLVPLET---GKVESGVVEEGKFRYYKFLVDEGMGEKVASRHANIEVKIETYTSGGDTD 325
+ P K + V E + ++ F G G ++ R + E + S G +
Sbjct: 192 RPVAPAPAKGEAKAKEVDVAEAEPKFNPFT---GSGRRLDGRPLSYEPQPGAANSNGQS- 247
Query: 326 IYVSRHPLVFPTQHRHEWSSHEMGSKVLI 354
HP+ + E ++ + K++
Sbjct: 248 -----HPVASSSSSGSEKATQQNRGKLVF 271
>AT2G29070.2 | chr2:12487797-12489335 FORWARD LENGTH=313
Length = 312
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 115/218 (52%), Gaps = 25/218 (11%)
Query: 91 GDKIKLPPSSFKELSDEGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTARE 150
GDKI +PPS+ L+ + PM F+LS V ++ + CGVLEFTA E
Sbjct: 28 GDKIIMPPSALDRLASLHI--EYPMLFQLSNVS-----------VEKTSHCGVLEFTADE 74
Query: 151 GSAELTPHVWNN--LFRGDSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLET 208
G L + N L GD +++V+ +SL KGTY KL+P F D+ N +A+LET
Sbjct: 75 GLVYLPYWMMQNMSLEEGD-----VMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILET 129
Query: 209 ALRNHATLSENDFVVVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLD--NVE 266
LR+++ L+ D ++V Y QY + V+E KP+S+VS++ETD EVD P LD E
Sbjct: 130 TLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPP---LDYKEPE 186
Query: 267 NQHVLVPLETGKVESGVVEEGKFRYYKFLVDEGMGEKV 304
L P ++ EE + KF G G+++
Sbjct: 187 KPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKRL 224
>AT1G09920.1 | chr1:3224863-3226860 REVERSE LENGTH=193
Length = 192
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 412 CKNCKRYISNRTSLLHEAYCVRHNVVCMHDGCGVVLRKEEATDHVHCNKCGQAFQQREME 471
C +C R I + LH +C R+ L K C CG ++ E
Sbjct: 12 CNHCDRDIPSLNIDLHRVHCARN------------LEK--------CKICGDMVPKKHAE 51
Query: 472 KHMKVFHEPLQCP-CGVVLEKEDMVQHQSSTCPLRLIVCRFCGDTVQAGGEPLDARDRLR 530
+H H P+ C C +E+E H+ CP R++ C FC PL A D
Sbjct: 52 EHYLNTHAPIACSMCKETIEREIFDSHKGEICPKRIVTCEFCEF-------PLPAVD--- 101
Query: 531 NMCEHESICGSRTAPCDSCGRSVMLKDMDIH 561
+ EH+ +CG+RT C C V L++ H
Sbjct: 102 -LAEHQEVCGNRTELCYQCNSYVRLRERYNH 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,711,578
Number of extensions: 517209
Number of successful extensions: 1225
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 5
Length of query: 569
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 465
Effective length of database: 8,255,305
Effective search space: 3838716825
Effective search space used: 3838716825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)