BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0531500 Os01g0531500|AK106208
(281 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32520.1 | chr2:13805823-13807442 REVERSE LENGTH=240 388 e-108
AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316 50 1e-06
>AT2G32520.1 | chr2:13805823-13807442 REVERSE LENGTH=240
Length = 239
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 179/233 (76%), Positives = 210/233 (90%)
Query: 46 FHMVQIQRDDTTFDAYVVGKENAPGIVVLQEWWGVDYEIKNHAVHISQIGEGYRALIPDL 105
F +QIQRDDTTFDAYVVGK++APGIVV+QEWWGVD+EIKNHA+ ISQ+ G++ALIPDL
Sbjct: 6 FRKIQIQRDDTTFDAYVVGKDDAPGIVVIQEWWGVDFEIKNHAIKISQLEPGFKALIPDL 65
Query: 106 YRGKVALDVAEAQHLMEGLDWPGAVKDIQASVKWLKANGSPKVGVTGYCMGGALSIASGV 165
YRGKV LD AEAQHLM+GLDWPGA+KDI+ASV WLK+NGS KVGVTG CMGGAL+IAS V
Sbjct: 66 YRGKVGLDTAEAQHLMDGLDWPGAIKDIRASVNWLKSNGSKKVGVTGMCMGGALAIASSV 125
Query: 166 SVPEVDAVVAFYGTPPSELADASKAQAPIQAHFGELDSFVGFADVTAAKSLEEKLKSSGV 225
VPEVDAVV FYGTP SELAD ++A+APIQAHFGELD+FVGF+DVTAAK+LEEKLK+SGV
Sbjct: 126 LVPEVDAVVGFYGTPSSELADPAQAKAPIQAHFGELDNFVGFSDVTAAKNLEEKLKASGV 185
Query: 226 PHEVHIYPGCSHAFMNTSPEAVKRRKEMGLTDENQAAIDLAWSRFSTWMGRFL 278
HEVHIYPG HAF+N SPE V RRK MGL+DE++AA++LAWSRF++WM ++L
Sbjct: 186 AHEVHIYPGNGHAFLNRSPEGVSRRKSMGLSDEDEAAVELAWSRFTSWMKQYL 238
>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
Length = 315
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 20/190 (10%)
Query: 63 VGKENAPGIVVLQEWWGV-DYEIKNHAVHISQIGEGYRALIPDLYRG---KVALDVAEAQ 118
V N G+++L + +G D ++ A ++ GY L+PDL+RG +E +
Sbjct: 108 VKNNNGTGLLLLSDVFGFQDSATRDFAYRVAC--NGYNVLVPDLFRGDPWSKNRPKSEYE 165
Query: 119 HLMEGLDWPGAVKDIQASVKWL-----KANGSPKVGVTGYCMGGA--LSIASGVSVPEVD 171
G D +D KW+ A S K+GV G+C GG + + +
Sbjct: 166 EWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGFCFGGGRVVDVLATDESGYFS 225
Query: 172 AVVAFYGTPPSELADASKAQAPIQAHFGELDSFVGFADVTAAKSLEEKLKSSGVPHEVHI 231
V+FYGT A A + P+ G+ D +V +EEK+ G +V +
Sbjct: 226 TGVSFYGTRIDS-AVAGDVKVPVLFIAGDRDP---LCEVKGLYEIEEKI---GEGSKVVV 278
Query: 232 YPGCSHAFMN 241
Y G H F++
Sbjct: 279 YEGRGHGFVH 288
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,600,167
Number of extensions: 222258
Number of successful extensions: 493
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)