BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0531300 Os01g0531300|Os01g0531300
(435 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61210.1 | chr1:22564785-22571555 FORWARD LENGTH=1182 100 1e-21
AT1G11160.1 | chr1:3733406-3739363 FORWARD LENGTH=1022 93 4e-19
AT5G08390.1 | chr5:2701448-2706910 FORWARD LENGTH=840 66 4e-11
AT5G23430.1 | chr5:7894073-7899862 REVERSE LENGTH=838 54 1e-07
>AT1G61210.1 | chr1:22564785-22571555 FORWARD LENGTH=1182
Length = 1181
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 81/143 (56%), Gaps = 23/143 (16%)
Query: 293 HMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKXXXXXXXXXXXXXPVLAGLLTS 352
++RH ++++ IKGAIAA+ KL D++VQADV++ L K PVL GLL S
Sbjct: 1037 QIVRHFWERSDIKGAIAALRKLSDHSVQADVINILTDKTEILTLDLFSQLAPVLTGLLGS 1096
Query: 353 KAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQ------------------ 394
K ER VSLE+LL L+ +FG VI+ST+SA VGVD+ AE+
Sbjct: 1097 KTERPVNVSLEMLLKLVAVFGTVIQSTVSARRVVGVDLHAEERLQICQSCSAELQKVQKI 1156
Query: 395 -----RRGGQSAQLAQELNLSLH 412
RRGG A+ AQELNL L
Sbjct: 1157 LPLLTRRGGLIARKAQELNLVLQ 1179
>AT1G11160.1 | chr1:3733406-3739363 FORWARD LENGTH=1022
Length = 1021
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 77/144 (53%), Gaps = 23/144 (15%)
Query: 293 HMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKXXXXXXXXXXXXXPVLAGLLTS 352
++RH ++++ +KGAI A+ KL D +VQADV+S L K PVL LL S
Sbjct: 877 QIVRHFWERSDVKGAIGALRKLTDQSVQADVISILTEKIEILTLDMFSQLVPVLTSLLGS 936
Query: 353 KAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQ------------------ 394
+ ER VSL++LL L+ +FG VIRST+SA VGVD+ A +
Sbjct: 937 RTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANERLEICQICSAGLHKIQRI 996
Query: 395 -----RRGGQSAQLAQELNLSLHD 413
RRGG + AQELNL L +
Sbjct: 997 LPVLARRGGLITRKAQELNLVLQE 1020
>AT5G08390.1 | chr5:2701448-2706910 FORWARD LENGTH=840
Length = 839
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%)
Query: 293 HMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKXXXXXXXXXXXXXPVLAGLLTS 352
++R +++N IK +I+++ K+ DNAV ADV+ + + P+L LL S
Sbjct: 693 QVVRRYWERNDIKNSISSIEKMADNAVIADVLLIVNERPEILTLDTCTSLLPLLTALLGS 752
Query: 353 KAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQR 395
+ H V L+LLL L++++G I S+LSA S+VGVDI+AEQR
Sbjct: 753 NMDSHLSVCLDLLLKLVRMYGSQIYSSLSAPSSVGVDIEAEQR 795
>AT5G23430.1 | chr5:7894073-7899862 REVERSE LENGTH=838
Length = 837
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 23/145 (15%)
Query: 293 HMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKRKXXXXXXXXXXXXXPVLAGLLTS 352
++R +++N +K +I ++ K+ DNAV ADV+ + + P+L LL S
Sbjct: 691 QVVRRYWERNDVKNSIGSIEKMADNAVTADVLGIITERNEILTLDNCTSLLPLLTALLGS 750
Query: 353 KAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQ------------------ 394
++H VSL+LLL L++++G I S+LSA ++VGVDI+AEQ
Sbjct: 751 GMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRCFVELEKVKAC 810
Query: 395 -----RRGGQSAQLAQELNLSLHDL 414
RRGG A+ ELNL+ ++
Sbjct: 811 LPSLARRGGLVAKSVLELNLAFQEV 835
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,524,952
Number of extensions: 319563
Number of successful extensions: 767
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 4
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)