BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0530300 Os01g0530300|AK111105
         (204 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58210.1  | chr1:21553621-21558056 FORWARD LENGTH=1247          52   2e-07
AT5G02520.1  | chr5:561325-563840 FORWARD LENGTH=599               47   6e-06

>AT1G58210.1 | chr1:21553621-21558056 FORWARD LENGTH=1247
          Length = 1246

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 30  VELDDWWLXXXXXXXXXXXXXXSNTTTSRAGRRFTSASIKTRHASGDLETEDGIIIMIAR 89
           V L DWWL              +  +  R    F+S +I  RH S  LE  DGI I I  
Sbjct: 66  VTLSDWWLTKKGKDLCIKGFESNGASGVRL---FSSGTISKRHESTTLEAIDGITISING 122

Query: 90  PPNISKMHLNGFPDEVSKHFSLGFPVQWEN 119
             N S+   NG   EV   F LGFP  WE+
Sbjct: 123 FINRSRCLENGISIEVCNRFRLGFPYDWED 152



>AT5G02520.1 | chr5:561325-563840 FORWARD LENGTH=599
          Length = 598

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 24  SYLQACVELDDWWLXXXXXXXXXXXXXXS---NTTTSRAGRRFTSASIKTRHASGDLETE 80
           S  Q  V L DWWL              +    +  +RA R FTS+ I        L   
Sbjct: 13  SSFQKTVVLRDWWLIKCPKEFEGKQFGVAGFEESVETRAMRVFTSSPITKALDVFTLLAS 72

Query: 81  DGIIIMIARPPNISKMHLNGFPDEVSKHFSLGFPVQWENIINA 123
           DGI I +    N  ++  NGF  E+S+ F  GFP  WE + N+
Sbjct: 73  DGIYITLRGFLNKERVLKNGFNPEISREFIFGFPPCWERVCNS 115



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,932,375
Number of extensions: 152084
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)