BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0527800 Os01g0527800|Os01g0527800
         (484 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47680.1  | chr3:17577483-17578391 REVERSE LENGTH=303           90   3e-18
AT5G41220.1  | chr5:16494560-16496969 REVERSE LENGTH=591           67   3e-11
AT5G41240.1  | chr5:16498293-16500811 REVERSE LENGTH=592           56   5e-08

>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
          Length = 302

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 144 APNVRTEKRLTWSTEEDIRLVSAWLNNSNDSISGNFKKNDCYWGDVTAEYNSTTPKN--R 201
            P V+ E+R  WS  ED+ LVSAWLN S D++ GN +K   +W  + A Y ++   N   
Sbjct: 40  TPKVKRERR-KWSAGEDLVLVSAWLNTSKDAVIGNEQKGYAFWSRIAAYYGASPKLNGVE 98

Query: 202 TRQEKQIKDRFHKIKKNVGRFCCVYKEVKSIYVNGQNDMQLREKAEAAYQADYKEGPFSF 261
            R+   IK R+ KI + VG+F   Y+       +GQND  +   A   Y +++  G F+ 
Sbjct: 99  KRETGHIKQRWTKINEGVGKFVGSYEAATKQKSSGQNDDDVVALAHEIYNSEH--GKFTL 156

Query: 262 LHCWNILRDQPKWHAYLEELEKPNKPKMDDEVEVMEQMSTPNSPEDIKRPVG 313
            H W +LR + KW +           +   +     Q  T  + E + RP+G
Sbjct: 157 EHAWRVLRFEQKWLSAPSTKATVMSKRRKSDKASTSQPQTHEAEEAMSRPIG 208



>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
          Length = 590

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 148 RTEKRLTWSTEEDIRLVSAWLNNSNDSISGNFKKNDCYWGDVTAEYNSTT-----PKNRT 202
           R + R  WS  ED  L+SAWLN S D I  N  K   +W  + A +N++      PK   
Sbjct: 266 RRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAYFNNSASLANLPK--- 322

Query: 203 RQEKQIKDRFHKIKKNVGRFCCVYKEVKSIYVNGQNDMQLREKAEAAYQADYKEGPFSFL 262
           R+    K R+ K+   V +F   Y +  +   +GQ++  + + A   Y  +YK   F+  
Sbjct: 323 REPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVYTNNYKSN-FTLE 381

Query: 263 HCWNILRDQPKW 274
           H W  LR   KW
Sbjct: 382 HAWRELRHSKKW 393



>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
          Length = 591

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 28/222 (12%)

Query: 120 QVAPCSKLHPGAQQPV---NIDSGDEEAPNV------RTEKRLTWSTEEDIRLVSAWLNN 170
           ++A  SK  PG Q  +   +   G  + PN+      R  +R  WS  +D+ L+SAWLN 
Sbjct: 231 EMATASK--PGPQSKIIQFSSIGGTSDGPNLVQDTTDRKARRRKWSPPDDVILISAWLNT 288

Query: 171 SNDS--ISGNFKKNDCYWGDVTAEY-NSTTPKNRTRQE-KQIKDRFHKIKKNVGRFCCVY 226
           S D   +  + ++   +W  + A   NS +  N  ++E    + R+ KI   V +F   Y
Sbjct: 289 SKDRKVVVYDEQQAHTFWKRIGAHVSNSASLANLPKREWNHCRQRWRKINDYVCKFVGCY 348

Query: 227 KEVKSIYVNGQNDMQLREKAEAAYQADYKEGPFSFLHCWNILRDQPKW-HAYLEELEKPN 285
            +  +   +GQ++  + + A   Y  +Y    F   H W  LR   KW   Y  E  K  
Sbjct: 349 DQALNQRASGQSEDDVFQVAYQLYYNNYMSN-FKLEHAWRELRHNKKWCSTYTSENSKGG 407

Query: 286 KPKMDDEVEVMEQMSTPNSPEDI-----------KRPVGTKT 316
                 ++      S+  +PE +            RP+G K+
Sbjct: 408 GSSKRTKLNGGGVYSSSCNPESVPIALDGEEQVMDRPLGVKS 449



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,251,418
Number of extensions: 444328
Number of successful extensions: 1475
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1469
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 382
Effective length of database: 8,310,137
Effective search space: 3174472334
Effective search space used: 3174472334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)