BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0521400 Os01g0521400|AK064554
         (404 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73920.1  | chr1:27791194-27794698 FORWARD LENGTH=705          541   e-154
AT1G18460.1  | chr1:6352682-6355971 FORWARD LENGTH=702            530   e-151

>AT1G73920.1 | chr1:27791194-27794698 FORWARD LENGTH=705
          Length = 704

 Score =  541 bits (1393), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/372 (69%), Positives = 300/372 (80%), Gaps = 27/372 (7%)

Query: 1   MGWVSNGVVGSPAFAAYDQGYDVFLGNLRGLVSREHVDKNISSYKYWKYSVNEHGTKDMP 60
           MGWVSNGVVGSPAFAAYDQGYDVFLGN RGLVSR+HV+KNISS ++W+YS+NEHGT+D+P
Sbjct: 345 MGWVSNGVVGSPAFAAYDQGYDVFLGNFRGLVSRDHVNKNISSKEFWRYSINEHGTEDIP 404

Query: 61  AIVEEIHKIKTSELGKSRPHISEETEDQNDKIKNLEVQASQDDERDNQPYKLCAVCHSLG 120
           A++E+IH+IKT+EL   +P+I EE   +                   +PYKLCA+CHSLG
Sbjct: 405 AMIEKIHEIKTTELKLCQPNIDEEINQE-------------------EPYKLCAICHSLG 445

Query: 121 GAVMLMYVVTSRIAQKPHRLSRLVLLSPAGFHEDSNVVFSMVEKLILFVGPVLAPFIPGL 180
           GA +LMYV+T +I +KPHRLSRL+LLSPAGFHEDSN+ F++VE + LF+ PVLA  +P  
Sbjct: 446 GAAILMYVITRKIKEKPHRLSRLILLSPAGFHEDSNLGFTIVEYIFLFISPVLARIVPAF 505

Query: 181 YIPTRFFRMLLNKLARDFNNYPALGGLVQTLMGYVVGGDSSNWVGVLGLPHYNMDDMPGV 240
           YIPTRFFRMLLNKLARDF+NYPALGGLVQTLM YVVGGDSSNWVGVLGLPHYNM+DMP V
Sbjct: 506 YIPTRFFRMLLNKLARDFHNYPALGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPAV 565

Query: 241 SFHVALHLAQIKRAKRFQMYDYGSPVANMEAYGTPEPLDLGAHYGLIDIPVDLVAGQRDR 300
           SF VA HLAQIK   +F+MYDYGS  ANME YG+PEPLDLG  Y  ID+PVDLVAG+ D+
Sbjct: 566 SFRVAQHLAQIKHTGKFRMYDYGSRSANMEVYGSPEPLDLGESYKFIDVPVDLVAGRNDK 625

Query: 301 VISPSMVKKHYKLMRKAGVEVSYNEFEYAHLDFTFSHREELLSYVMSRLLLVSDPGKGRI 360
           VI  SMVKKHY +MR A V+VS+NEFEYAHLDFTFSHREELL YVMSRLLLV        
Sbjct: 626 VIRSSMVKKHYNVMRDAEVDVSFNEFEYAHLDFTFSHREELLRYVMSRLLLV-------- 677

Query: 361 KQTSVRLRKLKK 372
           KQT V+ R+  +
Sbjct: 678 KQTPVQQRQTSQ 689



>AT1G18460.1 | chr1:6352682-6355971 FORWARD LENGTH=702
          Length = 701

 Score =  530 bits (1365), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 246/352 (69%), Positives = 294/352 (83%), Gaps = 19/352 (5%)

Query: 1   MGWVSNGVVGSPAFAAYDQGYDVFLGNLRGLVSREHVDKNISSYKYWKYSVNEHGTKDMP 60
           MGWVSNGVVGSPAFAAYDQGYDVFLGN RGLVSR+HV KNISS  +W+YS+NEH T+D+P
Sbjct: 343 MGWVSNGVVGSPAFAAYDQGYDVFLGNFRGLVSRDHVKKNISSKDFWRYSINEHATEDIP 402

Query: 61  AIVEEIHKIKTSELGKSRPHISEETEDQNDKIKNLEVQASQDDERDNQPYKLCAVCHSLG 120
           A++E+IH+IKTSEL   +P + E   +                   +QPYKLC V HSLG
Sbjct: 403 AMIEKIHEIKTSELKLYQPTMEEVVNE-------------------DQPYKLCVVSHSLG 443

Query: 121 GAVMLMYVVTSRIAQKPHRLSRLVLLSPAGFHEDSNVVFSMVEKLILFVGPVLAPFIPGL 180
           GA +LMYV+T +I +KPHRLSRL+LLSPAGFH DSN+ F+++E   LF+GPVL+  +P  
Sbjct: 444 GAAVLMYVITRKIEEKPHRLSRLILLSPAGFHYDSNMCFTLMEYTFLFLGPVLSRIVPAF 503

Query: 181 YIPTRFFRMLLNKLARDFNNYPALGGLVQTLMGYVVGGDSSNWVGVLGLPHYNMDDMPGV 240
           YIPT+FFRMLLNKLARDF+NYPA+GGLVQTLM YVVGGDSSNWVGV+GLPHYNM+DMPG+
Sbjct: 504 YIPTKFFRMLLNKLARDFHNYPAVGGLVQTLMSYVVGGDSSNWVGVMGLPHYNMNDMPGI 563

Query: 241 SFHVALHLAQIKRAKRFQMYDYGSPVANMEAYGTPEPLDLGAHYGLIDIPVDLVAGQRDR 300
           SF VA HLAQIK + +F+M+DYGS  ANM+ YG+PEPLDLG  YGLID+PVDLVAG++D+
Sbjct: 564 SFRVAQHLAQIKHSGKFKMFDYGSSSANMDVYGSPEPLDLGEFYGLIDVPVDLVAGKKDK 623

Query: 301 VISPSMVKKHYKLMRKAGVEVSYNEFEYAHLDFTFSHREELLSYVMSRLLLV 352
           VI PSMV+KHY++MR +GV+VSYNEFEYAHLDFTFSHREELL+YVMSRLLLV
Sbjct: 624 VIRPSMVRKHYRVMRDSGVDVSYNEFEYAHLDFTFSHREELLAYVMSRLLLV 675



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,171,188
Number of extensions: 399079
Number of successful extensions: 1224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)